Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52371 | Canola | cytosol | 94.24 | 95.27 |
| Bra027456.1-P | Field mustard | cytosol | 93.88 | 94.91 |
| CDX71518 | Canola | cytosol | 92.45 | 94.83 |
| CDX95156 | Canola | cytosol | 94.24 | 94.58 |
| CDY02422 | Canola | cytosol | 91.73 | 94.1 |
| Bra035332.1-P | Field mustard | cytosol | 91.73 | 94.1 |
| AT1G47250.1 | Thale cress | cytosol | 92.09 | 92.42 |
| CDY21248 | Canola | cytosol | 44.24 | 87.86 |
| VIT_18s0001g12760.t01 | Wine grape | cytosol | 78.78 | 77.11 |
| KRH38836 | Soybean | cytosol, nucleus | 78.78 | 76.84 |
| KRH05846 | Soybean | cytosol, nucleus | 78.06 | 76.41 |
| PGSC0003DMT400009588 | Potato | cytosol | 75.18 | 76.28 |
| GSMUA_Achr10P... | Banana | cytosol | 72.66 | 76.23 |
| PGSC0003DMT400039976 | Potato | cytosol | 74.82 | 76.19 |
| KRH15173 | Soybean | cytosol, nucleus | 78.78 | 76.04 |
| Solyc04g080590.2.1 | Tomato | extracellular | 75.9 | 71.28 |
| Os02t0133800-01 | Rice | plastid | 67.99 | 70.0 |
| Zm00001d015180_P001 | Maize | extracellular, mitochondrion, plasma membrane | 67.99 | 68.98 |
| EES04466 | Sorghum | cytosol | 66.91 | 68.89 |
| KRH20407 | Soybean | cytosol | 37.41 | 67.97 |
| TraesCS6A01G097800.1 | Wheat | unclear | 67.99 | 65.62 |
| TraesCS6B01G126000.1 | Wheat | cytosol | 67.99 | 65.4 |
| HORVU6Hr1G017500.1 | Barley | cytosol | 67.63 | 65.28 |
| TraesCS6D01G084800.1 | Wheat | golgi | 67.63 | 65.28 |
| AT1G53850.1 | Thale cress | cytosol | 31.65 | 37.13 |
| AT3G14290.1 | Thale cress | cytosol | 31.3 | 36.71 |
| AT1G16470.2 | Thale cress | cytosol | 30.22 | 35.74 |
| AT5G66140.1 | Thale cress | cytosol | 32.01 | 35.6 |
| AT1G79210.1 | Thale cress | cytosol | 29.86 | 35.32 |
| AT3G51260.1 | Thale cress | cytosol | 31.3 | 34.8 |
| AT3G22110.1 | Thale cress | cytosol, mitochondrion | 29.86 | 33.2 |
| AT4G15165.1 | Thale cress | cytosol | 23.38 | 31.25 |
| AT2G05840.1 | Thale cress | cytosol | 27.34 | 30.89 |
| AT5G35590.1 | Thale cress | cytosol | 27.34 | 30.89 |
| AT2G27020.2 | Thale cress | cytoskeleton, cytosol, nucleus | 26.26 | 20.8 |
Protein Annotations
| MapMan:19.2.6.1.1.6 | Gene3D:3.60.20.10 | EntrezGene:834290 | UniProt:A0A178UFX8 | ProteinID:AED94864.1 | EMBL:AF043526 |
| EMBL:AF375447 | ArrayExpress:AT5G42790 | EnsemblPlantsGene:AT5G42790 | RefSeq:AT5G42790 | TAIR:AT5G42790 | RefSeq:AT5G42790-TAIR-G |
| EnsemblPlants:AT5G42790.1 | TAIR:AT5G42790.1 | EMBL:AY058128 | EMBL:AY085017 | EMBL:AY113047 | Unigene:At.23724 |
| ProteinID:BAB10635.1 | GO:GO:0000502 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004175 | GO:GO:0004298 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0005839 | GO:GO:0005886 | GO:GO:0006508 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008233 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016787 | GO:GO:0019538 |
| GO:GO:0019773 | GO:GO:0030163 | GO:GO:0046685 | GO:GO:0051603 | InterPro:IPR023332 | InterPro:IPR029055 |
| EMBL:M98495 | RefSeq:NP_199093.1 | InterPro:Ntn_hydrolases_N | ProteinID:OAO92529.1 | UniProt:P34066 | Symbol:PAF1 |
| PFAM:PF00227 | PFAM:PF10584 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| ScanProsite:PS00388 | PFscan:PS51475 | PANTHER:PTHR11599 | PANTHER:PTHR11599:SF12 | InterPro:Proteasome_alpha-type | InterPro:Proteasome_alpha1 |
| InterPro:Proteasome_asu_N | InterPro:Proteasome_sua/b | SMART:SM00948 | SUPFAM:SSF56235 | UniParc:UPI0000000E3E | SEG:seg |
Description
PAF1Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:A0A178UFX8]
Coordinates
chr5:-:17159044..17161156
Molecular Weight (calculated)
30477.7 Da
IEP (calculated)
4.731
GRAVY (calculated)
-0.334
Length
278 amino acids
Sequence
(BLAST)
(BLAST)
001: MFRNQYDTDV TTWSPTGRLF QVEYAMEAVK QGSAAIGLRS RSHVVLACVN KAQSELSSHQ RKIFKVDDHI GVAIAGLTAD GRVLSRYMRS ESINHSFTYE
101: SPLPVGRLVV HLADKAQVCT QRSWKRPYGV GLLVGGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT YLERRFESFG DSSREDLIKD AILAVRETLQ
201: GETLKSSLCT VAILGVDEPF HFLDQEAIQK VIDTFEKVPE EEEGEGEAGE GEAEAAEAAP AERGGGVAGD QDVAPMEM
101: SPLPVGRLVV HLADKAQVCT QRSWKRPYGV GLLVGGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT YLERRFESFG DSSREDLIKD AILAVRETLQ
201: GETLKSSLCT VAILGVDEPF HFLDQEAIQK VIDTFEKVPE EEEGEGEAGE GEAEAAEAAP AERGGGVAGD QDVAPMEM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.