Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400009588 | Potato | cytosol | 83.8 | 86.86 |
| PGSC0003DMT400039976 | Potato | cytosol | 81.34 | 84.62 |
| CDY21248 | Canola | cytosol | 40.49 | 82.14 |
| KRH05846 | Soybean | cytosol, nucleus | 82.04 | 82.04 |
| Bra035332.1-P | Field mustard | cytosol | 78.17 | 81.92 |
| CDY02422 | Canola | cytosol | 78.17 | 81.92 |
| KRH38836 | Soybean | cytosol, nucleus | 82.04 | 81.75 |
| CDX71518 | Canola | cytosol | 77.82 | 81.55 |
| CDY52371 | Canola | cytosol | 78.87 | 81.45 |
| CDX95156 | Canola | cytosol | 79.23 | 81.23 |
| Bra014068.1-P | Field mustard | cytosol | 77.11 | 81.11 |
| Bra027456.1-P | Field mustard | cytosol | 78.52 | 81.09 |
| CDY47593 | Canola | cytosol | 77.46 | 80.59 |
| CDY17035 | Canola | cytosol | 77.46 | 80.59 |
| KRH15173 | Soybean | cytosol, nucleus | 81.69 | 80.56 |
| AT1G47250.1 | Thale cress | cytosol | 78.17 | 80.14 |
| Solyc04g080590.2.1 | Tomato | extracellular | 83.1 | 79.73 |
| AT5G42790.1 | Thale cress | cytosol | 77.11 | 78.78 |
| GSMUA_Achr10P... | Banana | cytosol | 71.48 | 76.6 |
| KRH20407 | Soybean | cytosol | 39.08 | 72.55 |
| Os02t0133800-01 | Rice | plastid | 67.96 | 71.48 |
| Zm00001d015180_P001 | Maize | extracellular, mitochondrion, plasma membrane | 68.31 | 70.8 |
| EES04466 | Sorghum | cytosol | 66.2 | 69.63 |
| HORVU6Hr1G017500.1 | Barley | cytosol | 68.31 | 67.36 |
| TraesCS6A01G097800.1 | Wheat | unclear | 68.31 | 67.36 |
| TraesCS6B01G126000.1 | Wheat | cytosol | 68.31 | 67.13 |
| TraesCS6D01G084800.1 | Wheat | golgi | 67.96 | 67.01 |
| VIT_10s0042g00070.t01 | Wine grape | cytosol | 30.99 | 35.2 |
| VIT_04s0023g03690.t01 | Wine grape | cytosol | 30.28 | 34.54 |
| VIT_03s0038g02300.t01 | Wine grape | cytosol | 29.58 | 33.73 |
| VIT_01s0011g01960.t01 | Wine grape | cytosol | 27.82 | 33.62 |
| VIT_08s0040g00410.t01 | Wine grape | cytosol | 27.46 | 31.33 |
| VIT_09s0002g00980.t01 | Wine grape | cytosol | 27.11 | 31.3 |
| VIT_09s0002g00350.t01 | Wine grape | endoplasmic reticulum | 30.63 | 29.69 |
Protein Annotations
| EntrezGene:100257364 | wikigene:100257364 | MapMan:19.2.6.1.1.6 | Gene3D:3.60.20.10 | EMBL:AM480817 | ProteinID:CAN79638 |
| ProteinID:CAN79638.1 | ProteinID:CCB45961 | ProteinID:CCB45961.1 | UniProt:F6H059 | EMBL:FN595227 | GO:GO:0000502 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004175 | GO:GO:0004298 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005839 | GO:GO:0006508 | GO:GO:0006511 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 |
| GO:GO:0019538 | GO:GO:0019773 | GO:GO:0051603 | InterPro:IPR023332 | InterPro:IPR029055 | EntrezGene:LOC100257364 |
| wikigene:LOC100257364 | InterPro:Ntn_hydrolases_N | PFAM:PF00227 | PFAM:PF10584 | ScanProsite:PS00388 | PFscan:PS51475 |
| PANTHER:PTHR11599 | PANTHER:PTHR11599:SF12 | InterPro:Proteasome_alpha-type | InterPro:Proteasome_alpha1 | InterPro:Proteasome_asu_N | InterPro:Proteasome_sua/b |
| SMART:SM00948 | SUPFAM:SSF56235 | MEROPS:T01.976 | TIGR:TC53960 | UniParc:UPI00015C7C75 | ArrayExpress:VIT_18s0001g12760 |
| EnsemblPlantsGene:VIT_18s0001g12760 | EnsemblPlants:VIT_18s0001g12760.t01 | unigene:Vvi.6955 | RefSeq:XP_002281948 | RefSeq:XP_002281948.1 | SEG:seg |
Description
Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:F6H059]
Coordinates
chr18:-:10874439..10879285
Molecular Weight (calculated)
30648.1 Da
IEP (calculated)
4.753
GRAVY (calculated)
-0.194
Length
284 amino acids
Sequence
(BLAST)
(BLAST)
001: MFRNQYDTDV TTWSPAGRLF QVEYAMEAVK QGSAAIGLRS KTHVVLACVN KANSELSSHQ KKIFKVDDHI GVAIAGLTAD GRVLSRYMRS ECINYSFTYE
101: SPLPVGRLVV QLADKAQVCT QRSWKRPYGV GLLVAGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT YLERRFGTFQ NSSREDLIKD ALFAIRETLQ
201: GEKLKSSICT VTVLGVGEPF HILDQETVQG LINAFEMAGE EAPAADQGAA GEEGAAGEVV AAAEEGAAPE EGAATEEGAA PMDI
101: SPLPVGRLVV QLADKAQVCT QRSWKRPYGV GLLVAGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT YLERRFGTFQ NSSREDLIKD ALFAIRETLQ
201: GEKLKSSICT VTVLGVGEPF HILDQETVQG LINAFEMAGE EAPAADQGAA GEEGAAGEVV AAAEEGAAPE EGAATEEGAA PMDI
001: MFRNQYDTDV TTWSPTGRLF QVEYAMEAVK QGSAAIGLRS RSHVVLACVN KAQSELSSHQ RKIFKVDDHI GVAIAGLTAD GRVLSRYMRS ESINHSFTYE
101: SPLPVGRLVV HLADKAQVCT QRSWKRPYGV GLLVGGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT YLERKFESFQ ESSKEDLIKD AIMAIRETLQ
201: GETLKSSLCT VSVLGVDEPF HFLDQESIQK VIDTFEKVPE EEEDAGEGEA EPEAAPGAAG TGEQGGSGDQ DVAPMEI
101: SPLPVGRLVV HLADKAQVCT QRSWKRPYGV GLLVGGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT YLERKFESFQ ESSKEDLIKD AIMAIRETLQ
201: GETLKSSLCT VSVLGVDEPF HFLDQESIQK VIDTFEKVPE EEEDAGEGEA EPEAAPGAAG TGEQGGSGDQ DVAPMEI
Arabidopsis Description
PAF2Proteasome subunit alpha type-1-B [Source:UniProtKB/Swiss-Prot;Acc:O23712]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.