Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0011g05260.t01 | |
| VIT_06s0080g00930.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G51260.1 | VIT_01s0011g05260.t01 | AT1G14920.1 | 21798944 |
| AT3G51260.1 | VIT_01s0011g05260.t01 | AT2G01570.1 | 21798944 |
| AT3G51260.1 | VIT_06s0080g00930.t01 | AT5G22310.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_04s0023g03690.t01 | Wine grape | cytosol | 98.39 | 98.39 |
| Solyc01g111450.2.1 | Tomato | plastid | 95.58 | 95.58 |
| PGSC0003DMT400015849 | Potato | cytosol | 95.58 | 95.58 |
| GSMUA_Achr2P03470_001 | Banana | cytosol | 95.58 | 95.58 |
| KRH69759 | Soybean | endoplasmic reticulum, nucleus | 95.18 | 95.18 |
| KRH08047 | Soybean | cytosol, endoplasmic reticulum, nucleus | 95.18 | 95.18 |
| GSMUA_Achr11P... | Banana | cytosol | 94.78 | 94.78 |
| AT5G66140.1 | Thale cress | cytosol | 91.97 | 91.6 |
| Os09t0538200-01 | Rice | cytosol, plastid | 91.57 | 91.57 |
| EER97100 | Sorghum | cytosol | 91.57 | 91.57 |
| CDY29009 | Canola | cytosol | 91.57 | 91.2 |
| Zm00001d022629_P001 | Maize | cytosol | 91.16 | 91.16 |
| Os08t0548900-01 | Rice | plastid | 91.16 | 91.16 |
| Bra012861.1-P | Field mustard | cytosol | 91.16 | 90.8 |
| Zm00001d053217_P001 | Maize | cytosol, extracellular | 90.76 | 90.76 |
| Zm00001d006235_P001 | Maize | cytosol, extracellular | 90.76 | 90.76 |
| TraesCS7D01G272300.1 | Wheat | cytosol | 90.76 | 90.76 |
| TraesCS7B01G170000.1 | Wheat | cytosol, golgi, plastid, unclear | 90.76 | 90.76 |
| TraesCS7A01G272000.1 | Wheat | cytosol | 90.76 | 90.76 |
| CDX90655 | Canola | cytosol | 90.76 | 90.4 |
| TraesCS5B01G329400.1 | Wheat | cytosol | 90.36 | 90.36 |
| TraesCS5A01G329300.1 | Wheat | cytosol | 90.36 | 90.36 |
| HORVU5Hr1G083350.1 | Barley | cytosol | 90.36 | 90.36 |
| EES15231 | Sorghum | cytosol | 90.36 | 90.36 |
| Bra036824.1-P | Field mustard | cytosol | 90.36 | 90.0 |
| AT3G51260.1 | Thale cress | cytosol | 90.36 | 90.0 |
| CDX77988 | Canola | cytosol, extracellular | 90.36 | 90.0 |
| CDX73737 | Canola | cytosol, extracellular | 89.96 | 89.6 |
| HORVU7Hr1G057390.2 | Barley | cytosol, nucleus, plastid | 89.96 | 78.87 |
| CDX81411 | Canola | mitochondrion, plastid | 67.87 | 59.72 |
| VIT_01s0011g01960.t01 | Wine grape | cytosol | 36.14 | 38.3 |
| VIT_09s0002g00980.t01 | Wine grape | cytosol | 35.34 | 35.77 |
| VIT_10s0042g00070.t01 | Wine grape | cytosol | 34.54 | 34.4 |
| VIT_09s0002g00350.t01 | Wine grape | endoplasmic reticulum | 36.14 | 30.72 |
| VIT_18s0001g12760.t01 | Wine grape | cytosol | 33.73 | 29.58 |
| VIT_08s0040g00410.t01 | Wine grape | cytosol | 28.11 | 28.11 |
Protein Annotations
| EntrezGene:100257349 | wikigene:100257349 | MapMan:19.2.6.1.1.4 | Gene3D:3.60.20.10 | ProteinID:CBI37883 | ProteinID:CBI37883.3 |
| ncoils:Coil | UniProt:D7U564 | EMBL:FN596508 | GO:GO:0000502 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004175 | GO:GO:0004298 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0005839 | GO:GO:0006508 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008233 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0019773 |
| GO:GO:0051603 | InterPro:IPR023332 | InterPro:IPR029055 | EntrezGene:LOC100257349 | wikigene:LOC100257349 | InterPro:Ntn_hydrolases_N |
| PFAM:PF00227 | PFAM:PF10584 | ScanProsite:PS00388 | PFscan:PS51475 | PANTHER:PTHR11599 | PANTHER:PTHR11599:SF106 |
| InterPro:Proteasome_alpha-type | InterPro:Proteasome_asu_N | InterPro:Proteasome_sua/b | SMART:SM00948 | SUPFAM:SSF56235 | MEROPS:T01.974 |
| TIGR:TC55704 | UniParc:UPI00015C9187 | ArrayExpress:VIT_03s0038g02300 | EnsemblPlantsGene:VIT_03s0038g02300 | EnsemblPlants:VIT_03s0038g02300.t01 | RefSeq:XP_002278162 |
| RefSeq:XP_002278162.1 | SEG:seg | : | : | : | : |
Description
Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:D7U564]
Coordinates
chr3:+:1570637..1574913
Molecular Weight (calculated)
27210.5 Da
IEP (calculated)
7.566
GRAVY (calculated)
-0.293
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MARYDRAITV FSPDGHLFQV EYALEAVRKG NAAVGVRGTD TIVLGVEKKS TAKLQDSRTV RKIVNLDDHI ALACAGLKAD ARVLINRARI ECQSHRLTVE
101: DPVTVEYITR YIAGLQQKYT QSGGVRPFGL STLIIGFDPY TGVPSLYQTD PSGTFSAWKA NATGRNSNSM REFLEKNYKE TSGQETVKLA IRALLEVVES
201: GGKNIEIAVM TKEHGLRQLE EAEIDAIVAE IEAEKAAAEA AKKGPPKET
101: DPVTVEYITR YIAGLQQKYT QSGGVRPFGL STLIIGFDPY TGVPSLYQTD PSGTFSAWKA NATGRNSNSM REFLEKNYKE TSGQETVKLA IRALLEVVES
201: GGKNIEIAVM TKEHGLRQLE EAEIDAIVAE IEAEKAAAEA AKKGPPKET
001: MARYDRAITV FSPDGHLFQV EYALEAVRKG NAAVGVRGTD TVVLAVEKKS TPKLQDSRSA RKIVSLDNHI ALACAGLKAD ARVLINKARI ECQSHRLTLE
101: DPVTVEYITR YIAGLQQKYT QSGGVRPFGL STLIVGFDPY SRLPSLYQTD PSGTFSAWKA NATGRNSNSI REFLEKNYKE SSGQETIKLA IRALLEVVES
201: GGKNIEVAVM TREETGLRQL EEAEIDAIVA KIEAEKAAAE AAKKGPPKET
101: DPVTVEYITR YIAGLQQKYT QSGGVRPFGL STLIVGFDPY SRLPSLYQTD PSGTFSAWKA NATGRNSNSI REFLEKNYKE SSGQETIKLA IRALLEVVES
201: GGKNIEVAVM TREETGLRQL EEAEIDAIVA KIEAEKAAAE AAKKGPPKET
Arabidopsis Description
PAD2Proteasome subunit alpha type-7-B [Source:UniProtKB/Swiss-Prot;Acc:O24616]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.