Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G329400.1 | Wheat | cytosol | 100.0 | 100.0 |
| TraesCS5A01G329300.1 | Wheat | cytosol | 100.0 | 100.0 |
| Os08t0548900-01 | Rice | plastid | 95.98 | 95.98 |
| HORVU6Hr1G051730.1 | Barley | cytosol | 47.39 | 95.16 |
| Zm00001d053217_P001 | Maize | cytosol, extracellular | 94.38 | 94.38 |
| EES15231 | Sorghum | cytosol | 94.38 | 94.38 |
| GSMUA_Achr11P... | Banana | cytosol | 91.97 | 91.97 |
| GSMUA_Achr2P03470_001 | Banana | cytosol | 91.97 | 91.97 |
| KRH08047 | Soybean | cytosol, endoplasmic reticulum, nucleus | 91.16 | 91.16 |
| KRH69759 | Soybean | endoplasmic reticulum, nucleus | 90.76 | 90.76 |
| VIT_04s0023g03690.t01 | Wine grape | cytosol | 90.36 | 90.36 |
| VIT_03s0038g02300.t01 | Wine grape | cytosol | 90.36 | 90.36 |
| Solyc01g111450.2.1 | Tomato | plastid | 88.75 | 88.75 |
| PGSC0003DMT400015849 | Potato | cytosol | 88.75 | 88.75 |
| AT5G66140.1 | Thale cress | cytosol | 88.75 | 88.4 |
| Bra012861.1-P | Field mustard | cytosol | 88.75 | 88.4 |
| CDX90655 | Canola | cytosol | 88.35 | 88.0 |
| CDY29009 | Canola | cytosol | 88.35 | 88.0 |
| AT3G51260.1 | Thale cress | cytosol | 87.95 | 87.6 |
| Bra036824.1-P | Field mustard | cytosol | 87.55 | 87.2 |
| CDX77988 | Canola | cytosol, extracellular | 87.55 | 87.2 |
| CDX73737 | Canola | cytosol, extracellular | 87.15 | 86.8 |
| HORVU7Hr1G057390.2 | Barley | cytosol, nucleus, plastid | 97.19 | 85.21 |
| CDX81411 | Canola | mitochondrion, plastid | 66.67 | 58.66 |
| HORVU4Hr1G042970.6 | Barley | cytosol, golgi, nucleus | 59.04 | 44.95 |
| HORVU4Hr1G040770.1 | Barley | cytosol | 36.14 | 37.97 |
| HORVU3Hr1G068660.1 | Barley | cytosol | 35.74 | 37.87 |
| HORVU5Hr1G038710.1 | Barley | cytosol | 28.11 | 35.18 |
| HORVU7Hr1G027220.2 | Barley | cytosol | 34.54 | 32.45 |
| HORVU2Hr1G036390.6 | Barley | plastid | 34.94 | 32.22 |
| HORVU4Hr1G076770.2 | Barley | cytosol | 34.94 | 30.85 |
| HORVU3Hr1G068630.1 | Barley | mitochondrion | 18.07 | 29.61 |
| HORVU1Hr1G068490.1 | Barley | cytosol | 29.32 | 29.32 |
| HORVU0Hr1G001180.1 | Barley | cytosol | 29.32 | 29.32 |
| HORVU6Hr1G017500.1 | Barley | cytosol | 32.53 | 28.12 |
| HORVU5Hr1G076600.1 | Barley | plastid | 24.5 | 23.55 |
Protein Annotations
| MapMan:19.2.6.1.1.4 | Gene3D:3.60.20.10 | UniProt:A0A287S239 | ncoils:Coil | GO:GO:0000502 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004175 | GO:GO:0004298 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005839 | GO:GO:0006508 | GO:GO:0006511 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008233 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 |
| GO:GO:0019773 | GO:GO:0051603 | EnsemblPlantsGene:HORVU5Hr1G083350 | EnsemblPlants:HORVU5Hr1G083350.1 | InterPro:IPR023332 | InterPro:IPR029055 |
| InterPro:Ntn_hydrolases_N | PFAM:PF00227 | PFAM:PF10584 | ScanProsite:PS00388 | PFscan:PS51475 | PANTHER:PTHR11599 |
| PANTHER:PTHR11599:SF106 | InterPro:Proteasome_alpha-type | InterPro:Proteasome_asu_N | InterPro:Proteasome_sua/b | SMART:SM00948 | SUPFAM:SSF56235 |
| UniParc:UPI0001890521 | SEG:seg | : | : | : | : |
Description
Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:A0A287S239]
Coordinates
chrchr5H:-:570046590..570050643
Molecular Weight (calculated)
27289.4 Da
IEP (calculated)
8.602
GRAVY (calculated)
-0.398
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MARYDRAITV FSPDGHLFQV EYALEAVRKG NAAVGVRGTD TVVLGVEKKS TPKLQDSRSV RKIASLDTHV ALACAGLKAD ARVLINRARV ECQSHRLTVE
101: DPVTVEYITR YIAGLQQKYT QSGGVRPFGL STLIVGFDPY TDKPALYQTD PSGTFSAWKA NATGRNSNSM REFLEKNYKD TSGKETIKLT IRALLEVVES
201: GGKNIEIAVM TKKDGLRQLE ETEIDEYVAE IEAEKAAAEA AKKSGPKDT
101: DPVTVEYITR YIAGLQQKYT QSGGVRPFGL STLIVGFDPY TDKPALYQTD PSGTFSAWKA NATGRNSNSM REFLEKNYKD TSGKETIKLT IRALLEVVES
201: GGKNIEIAVM TKKDGLRQLE ETEIDEYVAE IEAEKAAAEA AKKSGPKDT
001: MARYDRAITV FSPDGHLFQV EYALEAVRKG NAAVGVRGTD TVVLAVEKKS TPKLQDSRSA RKIVSLDNHI ALACAGLKAD ARVLINKARI ECQSHRLTLE
101: DPVTVEYITR YIAGLQQKYT QSGGVRPFGL STLIVGFDPY SRLPSLYQTD PSGTFSAWKA NATGRNSNSI REFLEKNYKE SSGQETIKLA IRALLEVVES
201: GGKNIEVAVM TREETGLRQL EEAEIDAIVA KIEAEKAAAE AAKKGPPKET
101: DPVTVEYITR YIAGLQQKYT QSGGVRPFGL STLIVGFDPY SRLPSLYQTD PSGTFSAWKA NATGRNSNSI REFLEKNYKE SSGQETIKLA IRALLEVVES
201: GGKNIEVAVM TREETGLRQL EEAEIDAIVA KIEAEKAAAE AAKKGPPKET
Arabidopsis Description
PAD2Proteasome subunit alpha type-7-B [Source:UniProtKB/Swiss-Prot;Acc:O24616]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.