Factsheet for Solyc01g111450.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
extracellular: 22364583
plastid: 22908117
plastid: 26371478
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g074190.2.1
Solyc11g068720.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51260.1	Solyc06g074190.2.1	AT5G22310.1	21798944
AT3G51260.1	Solyc11g068720.1.1	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015849	Potato	cytosol	100.0	100.0
VIT_03s0038g02300.t01	Wine grape	cytosol	95.58	95.58
KRH69759	Soybean	endoplasmic reticulum, nucleus	94.78	94.78
KRH08047	Soybean	cytosol, endoplasmic reticulum, nucleus	94.38	94.38
VIT_04s0023g03690.t01	Wine grape	cytosol	93.98	93.98
GSMUA_Achr2P03470_001	Banana	cytosol	93.57	93.57
GSMUA_Achr11P...	Banana	cytosol	93.57	93.57
AT5G66140.1	Thale cress	cytosol	91.97	91.6
CDX77988	Canola	cytosol, extracellular	91.97	91.6
Bra036824.1-P	Field mustard	cytosol	91.97	91.6
CDY29009	Canola	cytosol	91.57	91.2
CDX73737	Canola	cytosol, extracellular	91.57	91.2
AT3G51260.1	Thale cress	cytosol	91.16	90.8
Bra012861.1-P	Field mustard	cytosol	91.16	90.8
CDX90655	Canola	cytosol	90.76	90.4
EER97100	Sorghum	cytosol	90.36	90.36
Zm00001d022629_P001	Maize	cytosol	89.96	89.96
Zm00001d006235_P001	Maize	cytosol, extracellular	89.56	89.56
Os09t0538200-01	Rice	cytosol, plastid	89.56	89.56
Zm00001d053217_P001	Maize	cytosol, extracellular	89.16	89.16
Os08t0548900-01	Rice	plastid	89.16	89.16
HORVU5Hr1G083350.1	Barley	cytosol	88.75	88.75
TraesCS7D01G272300.1	Wheat	cytosol	88.75	88.75
TraesCS7B01G170000.1	Wheat	cytosol, golgi, plastid, unclear	88.75	88.75
TraesCS7A01G272000.1	Wheat	cytosol	88.75	88.75
TraesCS5B01G329400.1	Wheat	cytosol	88.75	88.75
TraesCS5A01G329300.1	Wheat	cytosol	88.75	88.75
EES15231	Sorghum	cytosol	88.35	88.35
Solyc01g111460.2.1	Tomato	cytosol	40.56	78.91
HORVU7Hr1G057390.2	Barley	cytosol, nucleus, plastid	87.95	77.11
CDX81411	Canola	mitochondrion, plastid	68.67	60.42
Solyc10g008010.2.1	Tomato	extracellular, plastid	36.55	38.72
Solyc07g055080.2.1	Tomato	cytosol, endoplasmic reticulum	36.55	38.72
Solyc02g070510.2.1	Tomato	nucleus	36.14	37.97
Solyc08g016510.2.1	Tomato	extracellular	35.74	37.55
Solyc12g009140.1.1	Tomato	extracellular	35.74	36.18
Solyc02g081700.1.1	Tomato	extracellular	34.54	34.68
Solyc04g080590.2.1	Tomato	extracellular	34.94	29.39
Solyc10g081130.1.1	Tomato	extracellular, plastid	28.92	28.92
Solyc10g077030.1.1	Tomato	extracellular	28.51	28.51

Protein Annotations

MapMan:19.2.6.1.1.4	Gene3D:3.60.20.10	ncoils:Coil	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824
GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773
GO:GO:0051603	InterPro:IPR023332	InterPro:IPR029055	UniProt:K4B407	InterPro:Ntn_hydrolases_N	PFAM:PF00227
PFAM:PF10584	ScanProsite:PS00388	PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF106	InterPro:Proteasome_alpha-type
InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b	SMART:SM00948	SUPFAM:SSF56235	EnsemblPlantsGene:Solyc01g111450.2	EnsemblPlants:Solyc01g111450.2.1
UniParc:UPI00005D3B5D	SEG:seg	:	:	:	:

Description

Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:K4B407]

Coordinates

chr1:+:97685879..97688924

Molecular Weight (calculated)

27100.3 Da

IEP (calculated)

7.619

GRAVY (calculated)

-0.322

Length

249 amino acids

Sequence
(BLAST)

001: MARYDRAITV FSPDGHLFQV EYAMEAVRKG NAAVGVRGTD TVVLGVEKKS TPKLQDSRSV RKIVNLDDHI ALACAGLKAD ARVLVNKARI ECQSHRLTVE
101: DPVTVEYITR YIAGLQQKYT QSGGVRPFGL STLIIGFDPH TGVPSLYQTD PSGTFSAWKA NATGRNSNST REFLEKNYKE TSGQETVKLA IRALLEVVES
201: GGKNIEVAVM TKEHGLKQLE EAEIDAIVAE IEAEKAAAEA AKKAPPKET

Best Arabidopsis Sequence Match ( AT5G66140.1 )
(BLAST)

001: MARYDRAITV FSPDGHLFQV EYALEAVRKG NAAVGVRGTD TVVLAVEKKS TPKLQDSRSA RKIVSLDNHI ALACAGLKAD ARVLINKARI ECQSHRLTLE
101: DPVTVEYITR YIAGLQQKYT QSGGVRPFGL STLIVGFDPY SRLPSLYQTD PSGTFSAWKA NATGRNSNSI REFLEKNYKE SSGQETIKLA IRALLEVVES
201: GGKNIEVAVM TREETGLRQL EEAEIDAIVA KIEAEKAAAE AAKKGPPKET

Arabidopsis Description

PAD2Proteasome subunit alpha type-7-B [Source:UniProtKB/Swiss-Prot;Acc:O24616]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.