CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015180_P001	Maize	extracellular, mitochondrion, plasma membrane	96.3	94.89
Os02t0133800-01	Rice	plastid	89.26	89.26
TraesCS6D01G084800.1	Wheat	golgi	85.93	80.56
TraesCS6B01G126000.1	Wheat	cytosol	85.93	80.28
TraesCS6A01G097800.1	Wheat	unclear	85.56	80.21
HORVU6Hr1G017500.1	Barley	cytosol	85.56	80.21
GSMUA_Achr10P...	Banana	cytosol	71.11	72.45
Bra014068.1-P	Field mustard	cytosol	67.78	67.78
PGSC0003DMT400009588	Potato	cytosol	68.52	67.52
CDX71518	Canola	cytosol	67.41	67.16
CDY21248	Canola	cytosol	34.81	67.14
CDY17035	Canola	cytosol	67.78	67.03
CDY47593	Canola	cytosol	67.78	67.03
AT5G42790.1	Thale cress	cytosol	68.89	66.91
Bra035332.1-P	Field mustard	cytosol	67.04	66.79
CDY02422	Canola	cytosol	67.04	66.79
PGSC0003DMT400039976	Potato	cytosol	67.41	66.67
Bra027456.1-P	Field mustard	cytosol	67.78	66.55
CDY52371	Canola	cytosol	67.78	66.55
AT1G47250.1	Thale cress	cytosol	68.15	66.43
VIT_18s0001g12760.t01	Wine grape	cytosol	69.63	66.2
CDX95156	Canola	cytosol	67.78	66.06
KRH05846	Soybean	cytosol, nucleus	67.41	64.08
KRH38836	Soybean	cytosol, nucleus	67.41	63.86
KRH15173	Soybean	cytosol, nucleus	67.41	63.19
Solyc04g080590.2.1	Tomato	extracellular	68.89	62.84
KRH20407	Soybean	cytosol	32.22	56.86
OQU93221	Sorghum	cytosol	31.85	36.29
EES10115	Sorghum	peroxisome	31.48	35.87
EES01630	Sorghum	cytosol	25.93	34.31
EER94765	Sorghum	cytosol	28.89	33.19
EES05472	Sorghum	cytosol	28.89	33.19
EER97100	Sorghum	cytosol	29.26	31.73
EES15231	Sorghum	cytosol	28.52	30.92
EER92751	Sorghum	cytosol	28.15	30.89
EER97635	Sorghum	cytosol	27.78	30.12
OQU75904	Sorghum	cytosol	26.67	28.8
KXG36677	Sorghum	plastid	25.56	25.18

Protein Annotations

MapMan:19.2.6.1.1.6	Gene3D:3.60.20.10	EntrezGene:8069936	UniProt:C5XTW7	ncoils:Coil	EnsemblPlants:EES04466
ProteinID:EES04466	ProteinID:EES04466.1	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175
GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005839	GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773	GO:GO:0051603
InterPro:IPR023332	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFAM:PF10584	ScanProsite:PS00388
PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF12	InterPro:Proteasome_alpha-type	InterPro:Proteasome_alpha1	InterPro:Proteasome_asu_N
InterPro:Proteasome_sua/b	SMART:SM00948	EnsemblPlantsGene:SORBI_3004G032000	SUPFAM:SSF56235	unigene:Sbi.2791	UniParc:UPI0001A8538B
RefSeq:XP_002451490.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:2586184..2589843

Molecular Weight (calculated)

29727.1 Da

IEP (calculated)

5.218

GRAVY (calculated)

-0.278

Length

270 amino acids

Sequence
(BLAST)

001: MFRNQYDTDV TTWSPQGRLF QVEYAMEAVK QGSACVGLCS RTHAVLAAVN KPASELSSYQ RKVFRVAEHA GVALAGLTAD GRVLSRFLRN ECINHSFVYE
101: APLPISRLAL KLADKAQVCT QRSWKRPYGV GLLVAGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT FLERRFQGYK DYTPEQLIKD ALSAIKETLQ
201: GEKLSSSNCT VAIVGRKDDG TIEPFEMIGA ARIQELIDSM EVAEEAPVEA SSSMQEEERG SEDAAAPMDI

Best Arabidopsis Sequence Match ( AT5G42790.1 )
(BLAST)

001: MFRNQYDTDV TTWSPTGRLF QVEYAMEAVK QGSAAIGLRS RSHVVLACVN KAQSELSSHQ RKIFKVDDHI GVAIAGLTAD GRVLSRYMRS ESINHSFTYE
101: SPLPVGRLVV HLADKAQVCT QRSWKRPYGV GLLVGGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT YLERRFESFG DSSREDLIKD AILAVRETLQ
201: GETLKSSLCT VAILGVDEPF HFLDQEAIQK VIDTFEKVPE EEEGEGEAGE GEAEAAEAAP AERGGGVAGD QDVAPMEM

Arabidopsis Description

PAF1Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:A0A178UFX8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.