CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0811100-01	Rice	cytosol	97.06	79.52
EER97635	Sorghum	cytosol	96.08	78.71
Zm00001d043137_P004	Maize	cytosol	97.06	77.04
Zm00001d012546_P002	Maize	cytosol	96.08	76.56
PGSC0003DMT400018521	Potato	cytosol	89.71	73.49
Solyc10g077030.1.1	Tomato	extracellular	89.22	73.09
PGSC0003DMT400072226	Potato	cytosol	89.22	73.09
Solyc10g081130.1.1	Tomato	extracellular, plastid	88.73	72.69
GSMUA_Achr8P23960_001	Banana	cytosol	88.73	72.69
GSMUA_Achr4P10040_001	Banana	cytosol	87.25	71.49
VIT_08s0040g00410.t01	Wine grape	cytosol	87.25	71.49
KRG94269	Soybean	cytosol	87.25	71.49
CDX71476	Canola	cytosol	85.78	70.28
Bra034316.1-P	Field mustard	cytosol	85.29	69.88
CDY04473	Canola	cytosol	85.29	69.88
CDY48190	Canola	cytosol	85.29	69.88
CDX77059	Canola	cytosol	84.31	69.08
KRH57704	Soybean	cytosol, endoplasmic reticulum	87.75	68.58
AT2G27020.2	Thale cress	cytoskeleton, cytosol, nucleus	85.78	49.86
EES05472	Sorghum	cytosol	32.84	28.51
OQU75904	Sorghum	cytosol	34.8	28.4
EER94765	Sorghum	cytosol	32.35	28.09
OQU93221	Sorghum	cytosol	31.86	27.43
EES10115	Sorghum	peroxisome	31.86	27.43
EES15231	Sorghum	cytosol	31.86	26.1
EES04466	Sorghum	cytosol	34.31	25.93
EER97100	Sorghum	cytosol	31.37	25.7
EER92751	Sorghum	cytosol	30.88	25.61
KXG36677	Sorghum	plastid	25.49	18.98

Protein Annotations

MapMan:19.2.6.1.1.7	Gene3D:3.60.20.10	EntrezGene:8082419	UniProt:C5XN40	EnsemblPlants:EES01630	ProteinID:EES01630
ProteinID:EES01630.2	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005768
GO:GO:0005794	GO:GO:0005802	GO:GO:0005839	GO:GO:0006508	GO:GO:0006511	GO:GO:0008150
GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
GO:GO:0019773	GO:GO:0051603	InterPro:IPR023332	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227
PFAM:PF10584	ScanProsite:PS00388	PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF101	InterPro:Proteasome_alpha-type
InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b	SMART:SM00948	EnsemblPlantsGene:SORBI_3003G330500	SUPFAM:SSF56235	unigene:Sbi.5479
UniParc:UPI0009DC8B46	RefSeq:XP_002456510.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:65547800..65557156

Molecular Weight (calculated)

22376.7 Da

IEP (calculated)

8.303

GRAVY (calculated)

-0.219

Length

204 amino acids

Sequence
(BLAST)

001: MSSIGTGYDL SVTTFSPDGR VFQVEYATKA VDNSGTIVGI KCKDGIVLGV EKLVTSKMIL EGSNRRIHSV HHHSGLAVAG LAADGRQIVS RTKSEAASYE
101: KVYGEPIPVK ELADRVASYV HLCTLYWWLR PFGCGVILGG YDRDGPQLYM IEPSGVSYKY FGAALGKGRQ AAKTIYGVHD EAKDKAFELE LSWICDESKR
201: QHQK

Best Arabidopsis Sequence Match ( AT2G27020.2 )
(BLAST)

001: MWLIIQNYTK EENHLKIFTI PLKDYQRMGQ IIILIKPVNN RIDPPDKTTR IVLISNPESD GAPKIWLVSG LRTKKTPFFD LSLNHSTKKK SEKSQRKKKS
101: RKMSSIGTGY DLSVTTFSPD GRVFQIEYAA KAVDNSGTVV GIKCKDGIVM GVEKLIASKM MLPGSNRRIH SVHRHAGMAV AGLAADGRQI VARAKSEARS
201: YESVYGDAVP VKELSERVAS YVHLCTLYWW LRPFGCGVIL GGYDRDGPQL YMIEPSGISY RYFGAAIGKG KQAAKTEIEK LNLSEMTCKE GVIEVAKIIY
301: KLHDEAKDKA FELEMSWICE ESKREHQKVP DDLLEEAKTA AKTALEEMDA D

Arabidopsis Description

PAG120S proteasome alpha subunit G1 [Source:TAIR;Acc:AT2G27020]
SUBAcon: [cytoskeleton,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.