Factsheet for PGSC0003DMT400072226

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g081130.1.1	Tomato	extracellular, plastid	99.2	99.2
PGSC0003DMT400018521	Potato	cytosol	97.59	97.59
VIT_08s0040g00410.t01	Wine grape	cytosol	95.18	95.18
KRG94269	Soybean	cytosol	92.77	92.77
GSMUA_Achr8P23960_001	Banana	cytosol	92.77	92.77
GSMUA_Achr4P10040_001	Banana	cytosol	92.37	92.37
Bra034316.1-P	Field mustard	cytosol	89.96	89.96
CDY48190	Canola	cytosol	89.96	89.96
CDY04473	Canola	cytosol	89.96	89.96
CDX71476	Canola	cytosol	89.56	89.56
Os01t0811100-01	Rice	cytosol	89.56	89.56
EES01630	Sorghum	cytosol	73.09	89.22
CDX77059	Canola	cytosol	89.16	89.16
EER97635	Sorghum	cytosol	88.75	88.75
Os05t0490800-01	Rice	cytosol, plasma membrane	87.55	87.55
TraesCS5D01G295300.1	Wheat	cytosol	87.55	87.55
TraesCS5B01G286900.1	Wheat	cytosol	87.55	87.55
TraesCS5A01G287400.1	Wheat	cytosol, golgi, unclear	87.55	87.55
TraesCS1D01G307800.1	Wheat	cytosol	87.55	87.55
TraesCS1B01G319100.1	Wheat	cytosol	87.55	87.55
HORVU1Hr1G068490.1	Barley	cytosol	87.15	87.15
HORVU0Hr1G001180.1	Barley	cytosol	87.15	87.15
TraesCS1A01G308400.1	Wheat	cytosol	87.15	87.15
Zm00001d012546_P002	Maize	cytosol	88.75	86.33
Zm00001d043137_P004	Maize	cytosol	87.95	85.21
KRH57704	Soybean	cytosol, endoplasmic reticulum	87.55	83.52
Zm00001d022316_P001	Maize	cytosol	88.75	80.36
HORVU5Hr1G076600.1	Barley	plastid	72.69	69.88
AT2G27020.2	Thale cress	cytoskeleton, cytosol, nucleus	89.96	63.82
Zm00001d007038_P001	Maize	cytosol	89.16	57.22
PGSC0003DMT400027339	Potato	cytosol	30.12	31.91
PGSC0003DMT400052657	Potato	cytosol	29.32	31.06
PGSC0003DMT400049388	Potato	cytosol	30.52	30.52
PGSC0003DMT400024982	Potato	cytosol, nucleus, peroxisome	28.11	29.54
PGSC0003DMT400018852	Potato	cytosol	29.32	29.44
PGSC0003DMT400015849	Potato	cytosol	29.32	29.32
PGSC0003DMT400054523	Potato	cytosol	27.71	29.11
PGSC0003DMT400007520	Potato	cytosol, extracellular	27.31	27.64
PGSC0003DMT400039976	Potato	cytosol	29.72	27.11
PGSC0003DMT400009588	Potato	cytosol	29.72	27.01

Protein Annotations

EntrezGene:102581342	MapMan:19.2.6.1.1.7	Gene3D:3.60.20.10	ncoils:Coil	GO:GO:0000502	GO:GO:0003674
GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0006511	GO:GO:0008150
GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
GO:GO:0019773	GO:GO:0051603	InterPro:IPR023332	InterPro:IPR029055	UniProt:M1CPW5	InterPro:Ntn_hydrolases_N
PFAM:PF00227	PFAM:PF10584	EnsemblPlantsGene:PGSC0003DMG400028108	PGSC:PGSC0003DMG400028108	EnsemblPlants:PGSC0003DMT400072226	ScanProsite:PS00388
PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF103	InterPro:Proteasome_alpha-type	InterPro:Proteasome_alpha3	InterPro:Proteasome_asu_N
InterPro:Proteasome_sua/b	SMART:SM00948	SUPFAM:SSF56235	UniParc:UPI000296F935	RefSeq:XP_006339239.1	SEG:seg

Description

Proteasome subunit alpha type [Source:PGSC_GENE;Acc:PGSC0003DMG400028108]

Coordinates

chr10:-:56811879..56816024

Molecular Weight (calculated)

27122.5 Da

IEP (calculated)

6.516

GRAVY (calculated)

-0.172

Length

249 amino acids

Sequence
(BLAST)

001: MSSIGTGYDL SVTTFSPDGR VFQIEYAGKA VDNSGTVVGI KCKDGIVLGV EKLIASKMML PGSNRRIHSV HRHSGMAVAG LAADGRQIVA RAKSEATSFE
101: SVYGEPIPVK ELAERVASYV HLCTLYWWLR PFGSGVILGG YDRDGPQLYM VEPSGVSYRY FGAAIGKGRQ AAKTEIEKLK LSEMTCRQGV IEVAKIIYGV
201: HDEAKDKAFE LEMSWVCDES NRQHQKVPAD LLEEAKAAAK AALEEMDAD

Best Arabidopsis Sequence Match ( AT2G27020.2 )
(BLAST)

001: MWLIIQNYTK EENHLKIFTI PLKDYQRMGQ IIILIKPVNN RIDPPDKTTR IVLISNPESD GAPKIWLVSG LRTKKTPFFD LSLNHSTKKK SEKSQRKKKS
101: RKMSSIGTGY DLSVTTFSPD GRVFQIEYAA KAVDNSGTVV GIKCKDGIVM GVEKLIASKM MLPGSNRRIH SVHRHAGMAV AGLAADGRQI VARAKSEARS
201: YESVYGDAVP VKELSERVAS YVHLCTLYWW LRPFGCGVIL GGYDRDGPQL YMIEPSGISY RYFGAAIGKG KQAAKTEIEK LNLSEMTCKE GVIEVAKIIY
301: KLHDEAKDKA FELEMSWICE ESKREHQKVP DDLLEEAKTA AKTALEEMDA D

Arabidopsis Description

PAG120S proteasome alpha subunit G1 [Source:TAIR;Acc:AT2G27020]
SUBAcon: [cytoskeleton,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.