Factsheet for PGSC0003DMT400007520

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 4
plastid 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400034355
PGSC0003DMT400043694

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G05840.1	PGSC0003DMT400034355	AT5G40580.1	21798944
AT2G05840.1	PGSC0003DMT400043694	AT5G40580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g009140.1.1	Tomato	extracellular	100.0	100.0
GSMUA_Achr10P...	Banana	cytosol	92.28	92.28
GSMUA_Achr6P11610_001	Banana	cytosol	92.28	92.28
KRH26034	Soybean	nucleus	91.87	91.87
VIT_09s0002g00980.t01	Wine grape	cytosol	91.46	91.46
KRH55422	Soybean	cytosol, endoplasmic reticulum	91.06	91.06
AT2G05840.1	Thale cress	cytosol	89.84	89.84
Bra015170.1-P	Field mustard	cytosol	89.02	89.02
CDY18045	Canola	cytosol	89.02	89.02
CDY33398	Canola	cytosol, extracellular	89.02	89.02
CDY50408	Canola	cytosol, extracellular	87.8	88.52
Bra013157.1-P	Field mustard	cytosol	88.21	88.21
Os03t0180400-01	Rice	cytosol	87.8	87.8
Zm00001d048271_P001	Maize	cytosol, extracellular	86.99	86.99
EER92751	Sorghum	cytosol	86.99	86.99
Zm00001d027896_P001	Maize	cytosol, extracellular, mitochondrion	86.99	86.99
TraesCS4D01G295500.1	Wheat	cytosol, golgi, plastid, unclear	86.59	86.59
AT5G35590.1	Thale cress	cytosol	86.18	86.18
TraesCS4A01G008300.1	Wheat	cytosol, golgi, plastid, unclear	85.77	85.77
CDX93103	Canola	cytosol	87.8	82.13
HORVU4Hr1G076770.2	Barley	cytosol	86.18	75.18
GSMUA_Achr3P02110_001	Banana	cytosol	35.77	64.23
KXG36677	Sorghum	plastid	63.82	57.3
Os07t0614100-01	Rice	cytosol	53.66	52.17
TraesCS2D01G177600.1	Wheat	mitochondrion	56.5	51.87
TraesCS2A01G170100.1	Wheat	mitochondrion	56.1	51.49
TraesCS2B01G196400.1	Wheat	mitochondrion	55.28	46.74
Zm00001d022131_P001	Maize	mitochondrion	57.32	44.34
PGSC0003DMT400015849	Potato	cytosol	36.18	35.74
PGSC0003DMT400027339	Potato	cytosol	33.33	34.89
PGSC0003DMT400052657	Potato	cytosol	32.52	34.04
PGSC0003DMT400049388	Potato	cytosol	32.52	32.13
PGSC0003DMT400054523	Potato	cytosol	30.49	31.65
PGSC0003DMT400018852	Potato	cytosol	31.71	31.45
PGSC0003DMT400024982	Potato	cytosol, nucleus, peroxisome	30.08	31.22
PGSC0003DMT400009588	Potato	cytosol	33.33	29.93
PGSC0003DMT400039976	Potato	cytosol	32.11	28.94
PGSC0003DMT400072226	Potato	cytosol	27.64	27.31
PGSC0003DMT400018521	Potato	cytosol	27.24	26.91

Protein Annotations

EntrezGene:102582717	MapMan:19.2.6.1.1.1	Gene3D:3.60.20.10	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824
GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773
GO:GO:0051603	InterPro:IPR023332	InterPro:IPR029055	UniProt:M0ZT51	InterPro:Ntn_hydrolases_N	PFAM:PF00227
PFAM:PF10584	EnsemblPlantsGene:PGSC0003DMG400002904	PGSC:PGSC0003DMG400002904	EnsemblPlants:PGSC0003DMT400007520	ScanProsite:PS00388	PFscan:PS51475
PANTHER:PTHR11599	PANTHER:PTHR11599:SF54	InterPro:Proteasome_alpha-type	InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b	InterPro:Proteasome_subunit_alpha6
SMART:SM00948	SUPFAM:SSF56235	UniParc:UPI000276982F	RefSeq:XP_006345264.1	:	:

Description

Proteasome subunit alpha type-6 [Source:PGSC_GENE;Acc:PGSC0003DMG400002904]

Coordinates

chr12:+:3234515..3239088

Molecular Weight (calculated)

27319.6 Da

IEP (calculated)

6.522

GRAVY (calculated)

-0.291

Length

246 amino acids

Sequence
(BLAST)

001: MSRGSGGGYD RHITIFSPEG RLFQVEYAFK AVKAAGITSI GVRGKDSVCV VTQKKVPDKL LDQTSVSHLF PITKYLGLLA TGMTADARTL VQQARNEAAE
101: FRFKYGYEMP ADVLSKWIAD KSQVYTQHAY MRPLGVVAMI LGIDEEKGPQ LFKCDPAGHF FGHKATSAGS KEQEAINFLE KKMKNNPAFS YEETVQTTIS
201: ALQSVLQEDF KASEIEVGVV RKEDPVFRVL TTEEIDEHLT AISERD

Best Arabidopsis Sequence Match ( AT2G05840.1 )
(BLAST)

001: MSRGSGAGYD RHITIFSPEG RLFQVEYAFK AVKAAGITSI GVRGKDSVCV VTQKKVPDKL LDQSSVSHLF PVTKYLGLLA TGMTADSRSL VQQARNEAAE
101: FRFQYGYEMP ADILAKWIAD KSQVYTQHAY MRPLGVVAMV LGIDEERGPL LYKCDPAGHF YGHKATSAGM KEQEAVNFLE KKMKENPAFT YDETVQTAIS
201: ALQSVLQEDF KATEIEVGVV RADDPLFRSL RTEEIDEHLT AISERD

Arabidopsis Description

PAA2Proteasome subunit alpha type-6-B [Source:UniProtKB/Swiss-Prot;Acc:O81147]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.