Factsheet for PGSC0003DMT400034355

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

mitochondrion 6
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g024420.2.1	Tomato	cytosol, extracellular	96.02	61.9
VIT_01s0137g00420.t01	Wine grape	cytosol	81.82	52.75
Os05t0187000-01	Rice	plastid	78.41	50.74
KRH73888	Soybean	cytosol, nucleus	77.84	50.55
KRH14247	Soybean	cytosol	77.84	50.55
EER98255	Sorghum	cytosol	78.41	50.55
TraesCS1A01G122700.1	Wheat	cytosol	77.84	50.37
TraesCS1D01G123600.1	Wheat	cytosol, golgi, unclear	77.84	50.37
Zm00001d019262_P001	Maize	cytosol	77.84	50.18
KXG19118	Sorghum	cytosol	77.27	49.82
GSMUA_Achr9P20290_001	Banana	cytosol	77.27	49.82
AT5G40580.1	Thale cress	cytosol	77.27	49.63
TraesCS1B01G141900.1	Wheat	cytosol	76.7	49.63
GSMUA_Achr7P03760_001	Banana	cytosol	75.57	48.54
CDY34146	Canola	cytosol	72.16	46.52
AT3G27430.2	Thale cress	cytosol	72.16	46.52
Bra033011.1-P	Field mustard	cytosol	72.16	46.52
PGSC0003DMT400043694	Potato	cytosol	80.68	43.03
HORVU1Hr1G028190.1	Barley	plastid	77.27	42.9
CDX83694	Canola	golgi	75.57	40.18
CDY03969	Canola	extracellular	73.3	39.33
OQU86162	Sorghum	plastid	32.95	36.71
Zm00001d035915_P001	Maize	extracellular	76.7	31.47
CDY13711	Canola	cytosol	80.11	26.86
Bra025276.1-P	Field mustard	cytosol	80.11	25.59
PGSC0003DMT400025311	Potato	cytosol	20.45	15.25
PGSC0003DMT400035591	Potato	cytosol	19.89	14.83
PGSC0003DMT400059981	Potato	cytosol	21.02	13.6
PGSC0003DMT400051560	Potato	cytosol	6.25	8.59
PGSC0003DMT400038738	Potato	cytosol	0.57	0.83

Protein Annotations

MapMan:19.2.6.1.2.2	Gene3D:3.60.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004298	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005839	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	InterPro:IPR023333	InterPro:IPR029055
UniProt:M1B0J3	InterPro:Ntn_hydrolases_N	PFAM:PF00227	EnsemblPlantsGene:PGSC0003DMG400013210	PGSC:PGSC0003DMG400013210	EnsemblPlants:PGSC0003DMT400034355
PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF67	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235
MEROPS:T01.A02	UniParc:UPI000295F945	:	:	:	:

Description

Proteasome subunit beta type [Source:PGSC_GENE;Acc:PGSC0003DMG400013210]

Coordinates

chr4:+:35777054..35778091

Molecular Weight (calculated)

19229.1 Da

IEP (calculated)

7.390

GRAVY (calculated)

-0.172

Length

176 amino acids

Sequence
(BLAST)

001: MVSSQLKHHR YHTGRESRVV TALTLLKSHL FSYQGHVSAA LVLGGVDVSG PHLHTIYPHG STDTLPYATM GSGSLAAMAI FESKYREGLS KDEGIKLVAE
101: AILSGVFNDL GSGSNVDICV ITKGHTEYLR NHMSPNPRTY TQKGYSFPKK TEVLLTKIIP LREMVEVIEG GDAMEE

Best Arabidopsis Sequence Match ( AT5G40580.2 )
(BLAST)

001: MSQSSVDIPP KGGFSFDLCK RNDMLTQKGL KAPSFLKTGT TIVGLIFKDG VILGADTRAT EGPIVADKNC EKIHYMAPNI YCCGAGTAAD TEAVTDMVSS
101: QLRLHRYQTG RDSRVVTALT LLKKHLFSYQ GHVSAALVLG GVDITGPHLH TIYPHGSTDT LPFATMGSGS LAAMSVFEAK YKEGLTRDEG IKLVAEAICS
201: GIFNDLGSGS NVDICVITKG HKEYLRNYME PNPRTYVSSK GYSFTKKTEV LLTKITPLLE RVEIVEVAGE AMEE

Arabidopsis Description

PBB2Proteasome subunit beta type-7-B [Source:UniProtKB/Swiss-Prot;Acc:Q7DLS1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.