Factsheet for PGSC0003DMT400059981

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 1
nucleus 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400040233

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26340.1	PGSC0003DMT400040233	AT1G10530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g056160.2.1	Tomato	extracellular	99.63	99.27
PGSC0003DMT400038738	Potato	cytosol	43.38	97.52
VIT_01s0010g02900.t01	Wine grape	cytosol	86.4	86.4
KRH54198	Soybean	nucleus	84.93	84.93
GSMUA_Achr9P07850_001	Banana	cytosol	84.19	83.88
KRH63751	Soybean	cytosol	82.35	82.35
CDX98014	Canola	extracellular	82.35	81.75
CDY16054	Canola	extracellular	81.99	81.39
CDY19402	Canola	cytosol	81.99	81.39
CDY21081	Canola	extracellular	81.99	81.39
CDY34594	Canola	cytosol	81.99	81.39
AT3G26340.1	Thale cress	cytosol	81.62	81.32
CDY26610	Canola	cytosol	81.62	81.02
Bra019807.1-P	Field mustard	cytosol	81.62	81.02
Bra026938.1-P	Field mustard	cytosol	65.44	77.73
AT1G13060.3	Thale cress	cytosol	80.88	73.83
PGSC0003DMT400025311	Potato	cytosol	25.0	28.81
PGSC0003DMT400035591	Potato	cytosol	23.9	27.54
PGSC0003DMT400051560	Potato	cytosol	11.03	23.44
PGSC0003DMT400034355	Potato	cytosol, mitochondrion	13.6	21.02
PGSC0003DMT400043694	Potato	cytosol	21.69	17.88

Protein Annotations

MapMan:19.2.6.1.2.5	Gene3D:3.60.20.10	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175
GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005839	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	InterPro:IPR023333	InterPro:IPR029055
UniProt:M1C504	InterPro:Ntn_hydrolases_N	PFAM:PF00227	EnsemblPlantsGene:PGSC0003DMG400023337	PGSC:PGSC0003DMG400023337	EnsemblPlants:PGSC0003DMT400059981
PRINTS:PR00141	ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF63	InterPro:Pept_T1A_subB
InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	UniParc:UPI000294A32A	SEG:seg

Description

Proteasome subunit beta type-5 [Source:PGSC_GENE;Acc:PGSC0003DMG400023337]

Coordinates

chr5:-:51686684..51690963

Molecular Weight (calculated)

29411.0 Da

IEP (calculated)

7.681

GRAVY (calculated)

-0.202

Length

272 amino acids

Sequence
(BLAST)

001: MKIDFSGLEP RAPLRGESSE LFDGISNSPS FHLPNTANFD GFQKEAIQMV KPAKGTTTLA FIFKGGVMVA ADSRASMGGY ISSQSVKKII EINPYMLGTM
101: AGGAADCQFW HRNLGIKCRL HELANKRRIS VTGASKLLAN ILYSYRGMGL SVGTMIAGWD EKGPGLYYVD SEGGRLKGNR FSVGSGSPYA YGVLDNGYRY
201: DLSVEEAAEL ARRAIYHATF RDGASGGVAS VYHVGPNGWK KLSGDDVGEL HYHYYPVEVA AVEQEMAEVP VA

Best Arabidopsis Sequence Match ( AT3G26340.1 )
(BLAST)

001: MKLDTSGLET TMPVIGFGSN SEMLDGFSSA PSFDLPRTTD FDGFQKKAVE MVKPAKGTTT LAFIFKEGVM VAADSRASMG GYISSQSVKK IIEINPYMLG
101: TMAGGAADCQ FWHRNLGIKC RLHELANKRR ISVSGASKLL ANMLYSYRGM GLSVGTMIAG WDETGPGLYY VDNEGGRLKG DRFSVGSGSP YAYGVLDSGY
201: KFDMSVEEAS ELARRSIYHA TFRDGASGGV ASVYHVGPQG WTKLSGDDVG ELHYHYYPVA PITAEHVMEE AAE

Arabidopsis Description

PBE2Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178VFG8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.