CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 3
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytoskeleton, cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY07805
CDY34887

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26340.1	CDY07805	AT1G10530.1	21798944
AT3G26340.1	CDY34887	AT1G10530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26610	Canola	cytosol	99.64	99.64
CDX98014	Canola	extracellular	99.27	99.27
CDY19402	Canola	cytosol	99.27	99.27
CDY34594	Canola	cytosol	98.91	98.91
CDY21081	Canola	extracellular	98.91	98.91
Bra026938.1-P	Field mustard	cytosol	82.48	98.69
AT3G26340.1	Thale cress	cytosol	90.88	91.21
AT1G13060.3	Thale cress	cytosol	93.43	85.91
VIT_01s0010g02900.t01	Wine grape	cytosol	83.94	84.56
Solyc05g056160.2.1	Tomato	extracellular	81.75	82.05
PGSC0003DMT400059981	Potato	cytosol	81.39	81.99
KRH54198	Soybean	nucleus	79.93	80.51
CDX83281	Canola	extracellular	39.05	79.85
KRH63751	Soybean	cytosol	79.2	79.78
CDY70092	Canola	cytosol	20.8	68.67
GSMUA_Achr6P28520_001	Banana	extracellular	17.15	50.0
CDY13421	Canola	cytosol	22.99	27.04
CDX72300	Canola	cytosol	22.99	27.04
CDY36450	Canola	cytosol	22.26	26.18
CDX68732	Canola	cytosol	21.9	25.75
CDY28254	Canola	cytosol	21.9	25.75
CDY23291	Canola	cytosol	21.9	25.75
CDY34146	Canola	cytosol	24.45	24.54
CDX83694	Canola	golgi	23.72	19.64
CDY03969	Canola	extracellular	23.36	19.51
CDY13711	Canola	cytosol	23.72	12.38

Protein Annotations

MapMan:19.2.6.1.2.5	Gene3D:3.60.20.10	GO:A0A078FT37	UniProt:A0A078FT37	unigene:Bna.1652	EnsemblPlants:CDY16054
ProteinID:CDY16054	ProteinID:CDY16054.1	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175
GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005839	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	EnsemblPlantsGene:GSBRNA2T00090452001	InterPro:IPR023333
InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PRINTS:PR00141	ScanProsite:PS00854	PFscan:PS51476
PANTHER:PTHR11599	PANTHER:PTHR11599:SF63	InterPro:Pept_T1A_subB	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b
SUPFAM:SSF56235	MEROPS:T01.A10	UniParc:UPI0004EAC981	:	:	:

Description

BnaC08g40690DProteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A078FT37]

Coordinates

chrLK032060:+:347196..349245

Molecular Weight (calculated)

29581.0 Da

IEP (calculated)

5.635

GRAVY (calculated)

-0.208

Length

274 amino acids

Sequence
(BLAST)

001: MKLDTSGFET SMPTIGFGSS NDMLDGFSTV PSFDLPRTTD FDGFQKEAVQ MVKPAKGTTT LAFIFKEGVM VAADSRASMG GYISSQSVKK IIEINPYMLG
101: TMAGGAADCQ FWHRNLGIKC RLHELANKRR ISVSGASKLL ANMLYSYRGM GLSVGTMIAG WDETGPGLYY VDNEGGRLKG DRFSVGSGSP YAYGVLDSGY
201: KFDMSVEEAS ELARRSIYHA TFRDGASGGV ASVYHVGPNG WTKLSGDDVG ELHYHYYPVP PAIAEQVMEE AAAE

Best Arabidopsis Sequence Match ( AT3G26340.1 )
(BLAST)

001: MKLDTSGLET TMPVIGFGSN SEMLDGFSSA PSFDLPRTTD FDGFQKKAVE MVKPAKGTTT LAFIFKEGVM VAADSRASMG GYISSQSVKK IIEINPYMLG
101: TMAGGAADCQ FWHRNLGIKC RLHELANKRR ISVSGASKLL ANMLYSYRGM GLSVGTMIAG WDETGPGLYY VDNEGGRLKG DRFSVGSGSP YAYGVLDSGY
201: KFDMSVEEAS ELARRSIYHA TFRDGASGGV ASVYHVGPQG WTKLSGDDVG ELHYHYYPVA PITAEHVMEE AAE

Arabidopsis Description

PBE2Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178VFG8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.