Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- plastid 1
- nucleus 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0026g00730.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G26340.1 | VIT_01s0026g00730.t01 | AT1G10530.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH63751 | Soybean | cytosol | 88.6 | 88.6 |
| KRH54198 | Soybean | nucleus | 87.13 | 87.13 |
| PGSC0003DMT400059981 | Potato | cytosol | 86.4 | 86.4 |
| HORVU1Hr1G053910.1 | Barley | cytosol | 11.4 | 86.11 |
| AT3G26340.1 | Thale cress | cytosol | 86.4 | 86.08 |
| Solyc05g056160.2.1 | Tomato | extracellular | 86.4 | 86.08 |
| CDY21081 | Canola | extracellular | 85.29 | 84.67 |
| CDX98014 | Canola | extracellular | 84.93 | 84.31 |
| CDY19402 | Canola | cytosol | 84.56 | 83.94 |
| CDY34594 | Canola | cytosol | 84.56 | 83.94 |
| CDY16054 | Canola | extracellular | 84.56 | 83.94 |
| CDY26610 | Canola | cytosol | 84.19 | 83.58 |
| Bra019807.1-P | Field mustard | cytosol | 84.19 | 83.58 |
| Bra026938.1-P | Field mustard | cytosol | 67.65 | 80.35 |
| AT1G13060.3 | Thale cress | cytosol | 81.99 | 74.83 |
| Os06t0153800-01 | Rice | plasma membrane, plastid | 75.0 | 73.65 |
| TraesCS7B01G008100.1 | Wheat | golgi, unclear | 72.06 | 70.25 |
| TraesCS7D01G105500.1 | Wheat | cytosol | 70.96 | 69.18 |
| EER89220 | Sorghum | cytosol | 70.96 | 68.93 |
| TraesCS7A01G110200.1 | Wheat | cytosol | 70.59 | 68.82 |
| Zm00001d045315_P003 | Maize | cytosol | 72.79 | 68.51 |
| HORVU5Hr1G110330.1 | Barley | cytosol | 70.22 | 68.46 |
| HORVU7Hr1G022970.1 | Barley | plastid | 70.96 | 57.1 |
| GSMUA_Achr6P28520_001 | Banana | extracellular | 17.65 | 51.06 |
| VIT_11s0065g00320.t01 | Wine grape | cytosol | 22.79 | 26.72 |
| VIT_04s0008g02850.t01 | Wine grape | cytosol | 21.32 | 26.01 |
| VIT_01s0137g00420.t01 | Wine grape | cytosol | 21.69 | 21.61 |
Protein Annotations
| EntrezGene:100261458 | wikigene:100261458 | MapMan:19.2.6.1.2.5 | Gene3D:3.60.20.10 | ProteinID:CBI27591 | ProteinID:CBI27591.3 |
| UniProt:D7TAR8 | EMBL:FN595754 | GO:GO:0000502 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004175 |
| GO:GO:0004298 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0005839 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0051603 | InterPro:IPR023333 | InterPro:IPR029055 |
| EntrezGene:LOC100261458 | wikigene:LOC100261458 | InterPro:Ntn_hydrolases_N | PFAM:PF00227 | PRINTS:PR00141 | ScanProsite:PS00854 |
| PFscan:PS51476 | PANTHER:PTHR11599 | PANTHER:PTHR11599:SF63 | InterPro:Pept_T1A_subB | InterPro:Proteasome_bsu_CS | InterPro:Proteasome_suB-type |
| InterPro:Proteasome_sua/b | SUPFAM:SSF56235 | MEROPS:T01.A10 | TIGR:TC60588 | UniParc:UPI00015CB52B | ArrayExpress:VIT_01s0010g02900 |
| EnsemblPlantsGene:VIT_01s0010g02900 | EnsemblPlants:VIT_01s0010g02900.t01 | unigene:Vvi.3197 | RefSeq:XP_002264828 | RefSeq:XP_002264828.1 | RefSeq:XP_010655500.1 |
Description
Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:D7TAR8]
Coordinates
chr1:+:19942816..19949698
Molecular Weight (calculated)
29268.8 Da
IEP (calculated)
6.524
GRAVY (calculated)
-0.145
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLDTSGLES TVPLFGANSE LLGGFSAAPS FELPNTTDFD GFQKDAIQMV KPAKGTTTLA FIFKEGVMVA ADSRASMGGY ISSQSVKKII EINPYMLGTM
101: AGGAADCQFW HRNLGIKCRL HELANKRRIS VTGASKLLAN ILYSYRGMGL SVGTMIAGWD ETGPGLYYVD SEGGRLKGTR FSVGSGSPYA YGVLDNGYRY
201: DMSVEEAAEL ARRSIYHATF RDGASGGVAS VYYVGPNGWK KLSGDDVGEL HYKYYPVMPS TVEQEMVEVA GA
101: AGGAADCQFW HRNLGIKCRL HELANKRRIS VTGASKLLAN ILYSYRGMGL SVGTMIAGWD ETGPGLYYVD SEGGRLKGTR FSVGSGSPYA YGVLDNGYRY
201: DMSVEEAAEL ARRSIYHATF RDGASGGVAS VYYVGPNGWK KLSGDDVGEL HYKYYPVMPS TVEQEMVEVA GA
001: MKLDTSGLET TMPVIGFGSN SEMLDGFSSA PSFDLPRTTD FDGFQKKAVE MVKPAKGTTT LAFIFKEGVM VAADSRASMG GYISSQSVKK IIEINPYMLG
101: TMAGGAADCQ FWHRNLGIKC RLHELANKRR ISVSGASKLL ANMLYSYRGM GLSVGTMIAG WDETGPGLYY VDNEGGRLKG DRFSVGSGSP YAYGVLDSGY
201: KFDMSVEEAS ELARRSIYHA TFRDGASGGV ASVYHVGPQG WTKLSGDDVG ELHYHYYPVA PITAEHVMEE AAE
101: TMAGGAADCQ FWHRNLGIKC RLHELANKRR ISVSGASKLL ANMLYSYRGM GLSVGTMIAG WDETGPGLYY VDNEGGRLKG DRFSVGSGSP YAYGVLDSGY
201: KFDMSVEEAS ELARRSIYHA TFRDGASGGV ASVYHVGPQG WTKLSGDDVG ELHYHYYPVA PITAEHVMEE AAE
Arabidopsis Description
PBE2Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178VFG8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.