Factsheet for HORVU1Hr1G053910.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G013820.4
HORVU5Hr1G059690.7
HORVU6Hr1G076380.4
HORVU7Hr1G039360.7
HORVU7Hr1G039390.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26340.1	HORVU2Hr1G013820.4	AT1G10530.1	21798944
AT3G26340.1	HORVU5Hr1G059690.7	AT1G10530.1	21798944
AT3G26340.1	HORVU6Hr1G076380.4	AT1G10530.1	21798944
AT3G26340.1	HORVU7Hr1G039360.7	AT1G10530.1	21798944
AT3G26340.1	HORVU7Hr1G039390.1	AT1G10530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400038738	Potato	cytosol	86.11	25.62
CDY70092	Canola	cytosol	41.67	18.07
HORVU5Hr1G110330.1	Barley	cytosol	91.67	11.83
KRH54198	Soybean	nucleus	86.11	11.4
KRH63751	Soybean	cytosol	86.11	11.4
VIT_01s0010g02900.t01	Wine grape	cytosol	86.11	11.4
AT3G26340.1	Thale cress	cytosol	86.11	11.36
GSMUA_Achr1P13460_001	Banana	cytosol	41.67	10.56
AT1G13060.3	Thale cress	cytosol	83.33	10.07
HORVU7Hr1G022970.1	Barley	plastid	91.67	9.76
Bra022650.1-P	Field mustard	cytosol	8.33	2.75
HORVU1Hr1G090810.1	Barley	cytosol	16.67	2.46
HORVU7Hr1G018660.1	Barley	cytosol	16.67	2.44
HORVU1Hr1G028190.1	Barley	plastid	19.44	2.21

Protein Annotations

Gene3D:3.60.20.10	MapMan:35.2	UniProt:A0A287FMR9	GO:GO:0003674	GO:GO:0003824	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005839	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	EnsemblPlantsGene:HORVU1Hr1G053910
EnsemblPlants:HORVU1Hr1G053910.1	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PANTHER:PTHR11599	PANTHER:PTHR11599:SF63
InterPro:Proteasome_sua/b	SUPFAM:SSF56235	UniParc:UPI000B4638F9	:	:	:

Description

No Description!

Coordinates

chrchr1H:-:398154000..398154107

Molecular Weight (calculated)

3934.8 Da

IEP (calculated)

8.530

GRAVY (calculated)

0.069

Length

36 amino acids

Sequence
(BLAST)

1: LAASQTVRKI IEINPYMLGT MAGGAADCQF WHRNLG

Best Arabidopsis Sequence Match ( AT3G26340.1 )
(BLAST)

001: MKLDTSGLET TMPVIGFGSN SEMLDGFSSA PSFDLPRTTD FDGFQKKAVE MVKPAKGTTT LAFIFKEGVM VAADSRASMG GYISSQSVKK IIEINPYMLG
101: TMAGGAADCQ FWHRNLGIKC RLHELANKRR ISVSGASKLL ANMLYSYRGM GLSVGTMIAG WDETGPGLYY VDNEGGRLKG DRFSVGSGSP YAYGVLDSGY
201: KFDMSVEEAS ELARRSIYHA TFRDGASGGV ASVYHVGPQG WTKLSGDDVG ELHYHYYPVA PITAEHVMEE AAE

Arabidopsis Description

PBE2Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178VFG8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.