CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 3
plastid 1
nucleus 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99257
KRH45741
KRH69484
KRH74672

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26340.1	KRG99257	AT1G10530.1	21798944
AT3G26340.1	KRH45741	AT1G10530.1	21798944
AT3G26340.1	KRH69484	AT1G10530.1	21798944
AT3G26340.1	KRH74672	AT1G10530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63751	Soybean	cytosol	94.85	94.85
VIT_01s0010g02900.t01	Wine grape	cytosol	87.13	87.13
HORVU1Hr1G053910.1	Barley	cytosol	11.4	86.11
PGSC0003DMT400059981	Potato	cytosol	84.93	84.93
Solyc05g056160.2.1	Tomato	extracellular	84.93	84.62
AT3G26340.1	Thale cress	cytosol	81.99	81.69
CDY21081	Canola	extracellular	81.25	80.66
CDY34594	Canola	cytosol	80.88	80.29
CDX98014	Canola	extracellular	80.88	80.29
CDY19402	Canola	cytosol	80.51	79.93
CDY16054	Canola	extracellular	80.51	79.93
CDY26610	Canola	cytosol	80.15	79.56
Bra019807.1-P	Field mustard	cytosol	80.15	79.56
Bra026938.1-P	Field mustard	cytosol	63.6	75.55
Os06t0153800-01	Rice	plasma membrane, plastid	75.37	74.01
AT1G13060.3	Thale cress	cytosol	79.41	72.48
TraesCS7B01G008100.1	Wheat	golgi, unclear	73.9	72.04
HORVU5Hr1G110330.1	Barley	cytosol	72.79	70.97
TraesCS7D01G105500.1	Wheat	cytosol	72.79	70.97
TraesCS7A01G110200.1	Wheat	cytosol	72.79	70.97
EER89220	Sorghum	cytosol	72.06	70.0
Zm00001d045315_P003	Maize	cytosol	74.26	69.9
HORVU7Hr1G022970.1	Barley	plastid	70.59	56.8
GSMUA_Achr6P28520_001	Banana	extracellular	17.65	51.06
KRH61963	Soybean	endoplasmic reticulum	22.06	25.75
KRH52623	Soybean	cytosol, nucleus	21.32	24.89
KRH73888	Soybean	cytosol, nucleus	23.16	23.25
KRH14247	Soybean	cytosol	23.16	23.25

Protein Annotations

EntrezGene:100779240	MapMan:19.2.6.1.2.5	Gene3D:3.60.20.10	EMBL:ACUP02003508	EnsemblPlantsGene:GLYMA_06G171200	GO:GO:0000502
GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0008150
GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
GO:GO:0051603	UniProt:I1KC47	InterPro:IPR023333	InterPro:IPR029055	EnsemblPlants:KRH54198	ProteinID:KRH54198
ProteinID:KRH54198.1	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PRINTS:PR00141	ScanProsite:PS00854	PFscan:PS51476
PANTHER:PTHR11599	PANTHER:PTHR11599:SF63	InterPro:Pept_T1A_subB	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b
SUPFAM:SSF56235	MEROPS:T01.A10	UniParc:UPI000233A8D2	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:14335046..14338797

Molecular Weight (calculated)

29263.7 Da

IEP (calculated)

6.032

GRAVY (calculated)

-0.146

Length

272 amino acids

Sequence
(BLAST)

001: MKLDTTGLES FPTLLAPQND VVGELSAAPS FDLPNSNDFD GFVKEAIQMV KPAKGTTTLA FIFKEGVMVA ADSRASMGGY ISSQSVKKII EINPYMLGTM
101: AGGAADCQFW HRNLGIKCRL HELANKRRIS VTGASKLLAN ILYSYRGMGL SVGTMIAGWD ETGPGLYYVD SEGGRLKGTR FSVGSGSPYA YGVLDSGYRY
201: DLSVEEAAEL ARRAIYHATF RDGASGGVAS VYYVGPNGWK KLSGDDVGEL HYHYYPVTPS TVEQEMVEAT GA

Best Arabidopsis Sequence Match ( AT3G26340.1 )
(BLAST)

001: MKLDTSGLET TMPVIGFGSN SEMLDGFSSA PSFDLPRTTD FDGFQKKAVE MVKPAKGTTT LAFIFKEGVM VAADSRASMG GYISSQSVKK IIEINPYMLG
101: TMAGGAADCQ FWHRNLGIKC RLHELANKRR ISVSGASKLL ANMLYSYRGM GLSVGTMIAG WDETGPGLYY VDNEGGRLKG DRFSVGSGSP YAYGVLDSGY
201: KFDMSVEEAS ELARRSIYHA TFRDGASGGV ASVYHVGPQG WTKLSGDDVG ELHYHYYPVA PITAEHVMEE AAE

Arabidopsis Description

PBE2Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178VFG8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.