CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 1
nucleus 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER96686
KXG19676
KXG30786
OQU80443

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26340.1	EER96686	AT1G10530.1	21798944
AT3G26340.1	KXG19676	AT1G10530.1	21798944
AT3G26340.1	KXG30786	AT1G10530.1	21798944
AT3G26340.1	OQU80443	AT1G10530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045315_P003	Maize	cytosol	91.07	88.24
Os06t0153800-01	Rice	plasma membrane, plastid	80.36	81.23
TraesCS7D01G105500.1	Wheat	cytosol	77.14	77.42
TraesCS7B01G008100.1	Wheat	golgi, unclear	77.14	77.42
TraesCS7A01G110200.1	Wheat	cytosol	75.36	75.63
HORVU5Hr1G110330.1	Barley	cytosol	75.36	75.63
KRH54198	Soybean	nucleus	70.0	72.06
VIT_01s0010g02900.t01	Wine grape	cytosol	68.93	70.96
AT3G26340.1	Thale cress	cytosol	68.57	70.33
KRH63751	Soybean	cytosol	68.21	70.22
AT1G13060.3	Thale cress	cytosol	67.14	63.09
Solyc03g063420.1.1	Tomato	mitochondrion	42.86	62.83
HORVU7Hr1G022970.1	Barley	plastid	74.29	61.54
PGSC0003DMT400038738	Potato	cytosol	25.71	59.5
Bra022650.1-P	Field mustard	cytosol	20.36	52.29
CDY70092	Canola	cytosol	14.64	49.4
GSMUA_Achr1P13460_001	Banana	cytosol	18.21	35.92
EES14124	Sorghum	cytosol	21.79	24.9
EER89160	Sorghum	cytosol	21.79	24.9
EER98255	Sorghum	cytosol	21.79	22.34
KXG19118	Sorghum	cytosol	21.43	21.98
OQU86162	Sorghum	plastid	9.64	17.09

Protein Annotations

MapMan:19.2.6.1.2.5	Gene3D:3.60.20.10	EntrezGene:8069165	UniProt:C5Z4C7	EnsemblPlants:EER89220	ProteinID:EER89220
ProteinID:EER89220.1	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	InterPro:IPR023333	InterPro:IPR029055	InterPro:Ntn_hydrolases_N
PFAM:PF00227	PRINTS:PR00141	ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF63
InterPro:Pept_T1A_subB	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	EnsemblPlantsGene:SORBI_3010G042800	SUPFAM:SSF56235
unigene:Sbi.4198	UniParc:UPI0001A895CC	RefSeq:XP_002437853.1	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:3304658..3307530

Molecular Weight (calculated)

30219.8 Da

IEP (calculated)

5.662

GRAVY (calculated)

-0.162

Length

280 amino acids

Sequence
(BLAST)

001: MAMKVDMSAL ETNFANMTFP ASDDTYFSAG APDVPSMVLP TCDDFDGFQA DTKAMVKNKK GTTTLAFIFD KGVIVAADSR ASMGGYISSQ TVRKIIEINP
101: YMLGTMAGGA ADCQFWHRNL GNKCRLHELS NKRRISIAGA SKLLANILYS YRGMGLSIGT MIAGWDEKGP GLYYVDSEGA RLVGNKFSVG SGSLYAYGVL
201: DDGYRFNMSV EEAAELARRA IYGATFRDAA SGGCVSVYHV GPDGWTKLSG DDVGELHYHY YPVQKTPVEQ EMTDAPTASA

Best Arabidopsis Sequence Match ( AT1G13060.1 )
(BLAST)

001: MKLDTSGFET SMPMIGFGSS SDMLDELSSV PSFDLPRTKE FDGFQKKAKD MLKHAKGTTT LAFIFKGGVM VAADSRASMG GYISSQSVKK IIEINPYMLG
101: TMAGGAADCQ FWHRNLGIKC RLHELANKRR ISVSGASKLL ANMLYSYRGM GLSVGTMIAG WDETGPGLYY VDNEGGRLKG DRFSVGSGSP YAYGVLDSGY
201: KYDMSVEEAS ELARRSIYHA TFRDGASGGV ASVYHVGPEG WTKLSGDDVG ELHYHYYPVA PATAEQVMEE ATAE

Arabidopsis Description

PBE120S proteasome beta subunit E1 [Source:UniProtKB/TrEMBL;Acc:F4HP14]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.