Factsheet for PGSC0003DMT400038738

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
nucleus 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol, mitochondrion, nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G053910.1	Barley	cytosol	25.62	86.11
CDY70092	Canola	cytosol	43.8	63.86
PGSC0003DMT400059981	Potato	cytosol	97.52	43.38
GSMUA_Achr1P13460_001	Banana	cytosol	46.28	39.44
Os06t0153800-01	Rice	plasma membrane, plastid	65.29	28.52
Zm00001d045315_P003	Maize	cytosol	63.64	26.64
TraesCS7B01G008100.1	Wheat	golgi, unclear	59.5	25.81
EER89220	Sorghum	cytosol	59.5	25.71
TraesCS7A01G110200.1	Wheat	cytosol	57.02	24.73
TraesCS7D01G105500.1	Wheat	cytosol	57.02	24.73
PGSC0003DMT400051560	Potato	cytosol	14.05	13.28
PGSC0003DMT400035591	Potato	cytosol	18.18	9.32
PGSC0003DMT400025311	Potato	cytosol	17.36	8.9
PGSC0003DMT400043694	Potato	cytosol	19.83	7.27
Bra022650.1-P	Field mustard	cytosol	4.13	4.59
Solyc03g063420.1.1	Tomato	mitochondrion	4.13	2.62
PGSC0003DMT400034355	Potato	cytosol, mitochondrion	0.83	0.57

Protein Annotations

MapMan:19.2.6.1.2.5	Gene3D:3.60.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005839	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603
InterPro:IPR029055	UniProt:M1B7B4	InterPro:Ntn_hydrolases_N	PFAM:PF00227	EnsemblPlantsGene:PGSC0003DMG400014972	PGSC:PGSC0003DMG400014972
EnsemblPlants:PGSC0003DMT400038738	ScanProsite:PS00854	PANTHER:PTHR11599	PANTHER:PTHR11599:SF63	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_sua/b
SUPFAM:SSF56235	UniParc:UPI000294DD5E	:	:	:	:

Description

Proteasome subunit beta type-5 [Source:PGSC_GENE;Acc:PGSC0003DMG400014972]

Coordinates

chr3:+:23066512..23068182

Molecular Weight (calculated)

12962.7 Da

IEP (calculated)

9.154

GRAVY (calculated)

-0.041

Length

121 amino acids

Sequence
(BLAST)

001: MKIDFSGLEP SAPLRGESSE LFDGISNSPS FHLPNTANFD GFQKEAIQMV KPAKGTTTLA FIFKGGVMVA ADSRASMGGY ISSQSVKKII EINPYMLGTM
101: AGGAADCQFW HRNLGIKIKV S

Best Arabidopsis Sequence Match ( AT3G26340.1 )
(BLAST)

001: MKLDTSGLET TMPVIGFGSN SEMLDGFSSA PSFDLPRTTD FDGFQKKAVE MVKPAKGTTT LAFIFKEGVM VAADSRASMG GYISSQSVKK IIEINPYMLG
101: TMAGGAADCQ FWHRNLGIKC RLHELANKRR ISVSGASKLL ANMLYSYRGM GLSVGTMIAG WDETGPGLYY VDNEGGRLKG DRFSVGSGSP YAYGVLDSGY
201: KFDMSVEEAS ELARRSIYHA TFRDGASGGV ASVYHVGPQG WTKLSGDDVG ELHYHYYPVA PITAEHVMEE AAE

Arabidopsis Description

PBE2Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178VFG8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.