Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- vacuole 2
- cytosol 2
- mitochondrion 1
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- plasma membrane 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400025311 | Potato | cytosol | 59.38 | 32.2 |
| GSMUA_Achr7P15820_001 | Banana | cytosol | 50.78 | 29.02 |
| GSMUA_Achr5P24110_001 | Banana | cytosol | 52.34 | 28.76 |
| PGSC0003DMT400035591 | Potato | cytosol | 52.34 | 28.39 |
| Os02t0770000-01 | Rice | cytosol | 48.44 | 25.2 |
| Os06t0139900-01 | Rice | cytosol, plasma membrane, plastid | 48.44 | 25.2 |
| Zm00001d036108_P001 | Maize | cytosol | 48.44 | 25.0 |
| EES14124 | Sorghum | cytosol | 47.66 | 24.9 |
| EER89160 | Sorghum | cytosol | 47.66 | 24.9 |
| TraesCS7A01G083200.1 | Wheat | cytosol | 47.66 | 24.8 |
| Zm00001d045403_P001 | Maize | cytosol | 47.66 | 24.7 |
| TraesCS1A01G413900.1 | Wheat | cytosol, golgi | 46.88 | 24.59 |
| TraesCS1B01G443900.1 | Wheat | cytosol | 46.88 | 24.59 |
| TraesCS1D01G421300.1 | Wheat | cytosol | 46.88 | 24.59 |
| HORVU1Hr1G090810.1 | Barley | cytosol | 46.88 | 24.59 |
| TraesCS7D01G078000.1 | Wheat | cytosol, golgi | 46.88 | 24.39 |
| HORVU7Hr1G018660.1 | Barley | cytosol | 46.88 | 24.39 |
| TraesCS4A01G381500.1 | Wheat | cytosol | 48.44 | 23.4 |
| PGSC0003DMT400038738 | Potato | cytosol | 13.28 | 14.05 |
| PGSC0003DMT400043694 | Potato | cytosol | 28.91 | 11.21 |
| PGSC0003DMT400059981 | Potato | cytosol | 23.44 | 11.03 |
| PGSC0003DMT400034355 | Potato | cytosol, mitochondrion | 8.59 | 6.25 |
Protein Annotations
| Gene3D:3.60.20.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004298 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005839 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0051603 |
| InterPro:IPR029055 | UniProt:M1BRW0 | InterPro:Ntn_hydrolases_N | PFAM:PF00227 | EnsemblPlantsGene:PGSC0003DMG400020027 | PGSC:PGSC0003DMG400020027 |
| EnsemblPlants:PGSC0003DMT400051560 | PANTHER:PTHR11599 | PANTHER:PTHR11599:SF102 | InterPro:Proteasome_sua/b | SUPFAM:SSF56235 | TMHMM:TMhelix |
| UniParc:UPI000295912F | : | : | : | : | : |
Description
Proteasome subunit beta type-6 [Source:PGSC_GENE;Acc:PGSC0003DMG400020027]
Coordinates
chr7:-:9306564..9307626
Molecular Weight (calculated)
13829.7 Da
IEP (calculated)
8.589
GRAVY (calculated)
0.323
Length
128 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKSSLDVEQ PHSMGTTIIG VTYNGGVVLG ADSRTSTGMY VANRASDKIT QLTDNVYVCR SGSVCYFCSL SLSLVAYISY FFKKRNCGTA ICAVALFVLF
101: SLCFHKGFLL FGSSIGMLST VDKSNSRN
101: SLCFHKGFLL FGSSIGMLST VDKSNSRN
001: MDLNLDAPHS MGTTIIGVTY NGGVVLGADS RTSTGMYVAN RASDKITQLT DNVYVCRSGS AADSQVVSDY VRYFLHQHTI QHGQPATVKV SANLIRMLAY
101: NNKQNMLQTG LIVGGWDKYE GGKIYGIPLG GTVVEQPFAI GGSGSSYLYG FFDQAWKDNM TKEEAEQLVV KAVSLAIARD GASGGVVRTV IINSEGVTRN
201: FYPGDKLQLW HEELEPQNSL LDILNAAGPE PMAM
101: NNKQNMLQTG LIVGGWDKYE GGKIYGIPLG GTVVEQPFAI GGSGSSYLYG FFDQAWKDNM TKEEAEQLVV KAVSLAIARD GASGGVVRTV IINSEGVTRN
201: FYPGDKLQLW HEELEPQNSL LDILNAAGPE PMAM
Arabidopsis Description
PBA1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:F4JRY2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.