Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G413900.1 | Wheat | cytosol, golgi | 99.59 | 99.59 |
| TraesCS1D01G421300.1 | Wheat | cytosol | 99.59 | 99.59 |
| HORVU1Hr1G090810.1 | Barley | cytosol | 98.36 | 98.36 |
| Os06t0139900-01 | Rice | cytosol, plasma membrane, plastid | 88.52 | 87.8 |
| Os02t0770000-01 | Rice | cytosol | 86.07 | 85.37 |
| Zm00001d036108_P001 | Maize | cytosol | 86.48 | 85.08 |
| Zm00001d045403_P001 | Maize | cytosol | 86.07 | 85.02 |
| EER89160 | Sorghum | cytosol | 84.84 | 84.49 |
| EES14124 | Sorghum | cytosol | 84.43 | 84.08 |
| GSMUA_Achr7P15820_001 | Banana | cytosol | 74.18 | 80.8 |
| GSMUA_Achr5P24110_001 | Banana | cytosol | 74.59 | 78.11 |
| VIT_11s0065g00320.t01 | Wine grape | cytosol | 73.77 | 77.59 |
| CDY36450 | Canola | cytosol | 72.95 | 76.39 |
| Bra011257.1-P | Field mustard | cytosol | 72.95 | 76.39 |
| PGSC0003DMT400025311 | Potato | cytosol | 73.77 | 76.27 |
| VIT_04s0008g02850.t01 | Wine grape | cytosol | 69.67 | 76.23 |
| KRH52623 | Soybean | cytosol, nucleus | 72.54 | 75.97 |
| CDY28254 | Canola | cytosol | 72.54 | 75.97 |
| CDY23291 | Canola | cytosol | 72.54 | 75.97 |
| CDY13421 | Canola | cytosol | 72.54 | 75.97 |
| CDX68732 | Canola | cytosol | 72.54 | 75.97 |
| Bra024015.1-P | Field mustard | cytosol | 72.54 | 75.97 |
| Bra010243.1-P | Field mustard | cytosol | 72.54 | 75.97 |
| KRH61963 | Soybean | endoplasmic reticulum | 72.13 | 75.54 |
| CDX72300 | Canola | cytosol | 72.13 | 75.54 |
| Solyc07g016200.2.1 | Tomato | extracellular, plastid | 72.95 | 75.42 |
| PGSC0003DMT400035591 | Potato | cytosol | 72.13 | 74.58 |
| AT4G31300.2 | Thale cress | cytosol | 70.49 | 73.5 |
| PGSC0003DMT400051560 | Potato | cytosol | 24.59 | 46.88 |
| TraesCS1B01G141900.1 | Wheat | cytosol | 25.82 | 23.16 |
| TraesCS7B01G008100.1 | Wheat | golgi, unclear | 26.23 | 22.94 |
Protein Annotations
| MapMan:19.2.6.1.2.1 | Gene3D:3.60.20.10 | GO:GO:0000502 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004175 |
| GO:GO:0004298 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 |
| GO:GO:0005774 | GO:GO:0005829 | GO:GO:0005839 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008219 | GO:GO:0008233 | GO:GO:0009056 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009987 |
| GO:GO:0010043 | GO:GO:0010363 | GO:GO:0016020 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0051603 |
| InterPro:IPR023333 | InterPro:IPR029055 | InterPro:Ntn_hydrolases_N | PFAM:PF00227 | PRINTS:PR00141 | ScanProsite:PS00854 |
| PFscan:PS51476 | PANTHER:PTHR11599 | PANTHER:PTHR11599:SF102 | InterPro:Pept_T1A_subB | InterPro:Proteasome_bsu_CS | InterPro:Proteasome_suB-type |
| InterPro:Proteasome_sua/b | SUPFAM:SSF56235 | EnsemblPlantsGene:TraesCS1B01G443900 | EnsemblPlants:TraesCS1B01G443900.1 | TIGR:cd03762 | SEG:seg |
Description
No Description!
Coordinates
chr1B:-:664952538..664955592
Molecular Weight (calculated)
26081.0 Da
IEP (calculated)
5.269
GRAVY (calculated)
-0.100
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAASLMGPS SADAPTDGEH RMGTTIVGVC YDGGVVLAAD SRTSTGMYVA NRASDKISQL TDNVYVCRSG SAADTQVISD YVRYFLHQHT IQLGQPATVK
101: VASNLVRLLA YQNKSMLQAG MIVGGWDKYE GGQIYSVPLG GTILRQPFAI GGSGSSYLYG LMDHEWKEGM TQEEAEKFVV KVVSLAIARD GASGGVVRTV
201: TINEAGVKRS FHPGDKLPLW HEEMEPQNSL LDILAAGSSD AMVQ
101: VASNLVRLLA YQNKSMLQAG MIVGGWDKYE GGQIYSVPLG GTILRQPFAI GGSGSSYLYG LMDHEWKEGM TQEEAEKFVV KVVSLAIARD GASGGVVRTV
201: TINEAGVKRS FHPGDKLPLW HEEMEPQNSL LDILAAGSSD AMVQ
001: MDLNLDAPHS MGTTIIGVTY NGGVVLGADS RTSTGMYVAN RASDKITQLT DNVYVCRSGS AADSQVVSDY VRYFLHQHTI QHGQPATVKV SANLIRMLAY
101: NNKNMLQTGL IVGGWDKYEG GKIYGIPLGG TVVEQPFAIG GSGSSYLYGF FDQAWKDNMT KEEAEQLVVK AVSLAIARDG ASGGVVRTVI INSEGVTRNF
201: YPGDKLQLWH EELEPQNSLL DILNAAGPEP MAM
101: NNKNMLQTGL IVGGWDKYEG GKIYGIPLGG TVVEQPFAIG GSGSSYLYGF FDQAWKDNMT KEEAEQLVVK AVSLAIARDG ASGGVVRTVI INSEGVTRNF
201: YPGDKLQLWH EELEPQNSLL DILNAAGPEP MAM
Arabidopsis Description
PBA1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:F4JRY2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.