CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68732	Canola	cytosol	100.0	100.0
CDY23291	Canola	cytosol	100.0	100.0
Bra011257.1-P	Field mustard	cytosol	97.0	97.0
CDY36450	Canola	cytosol	97.0	97.0
CDY13421	Canola	cytosol	95.28	95.28
CDX72300	Canola	cytosol	94.85	94.85
AT4G31300.2	Thale cress	cytosol	94.42	94.02
VIT_04s0008g02850.t01	Wine grape	cytosol	84.55	88.34
KRH52623	Soybean	cytosol, nucleus	86.27	86.27
KRH61963	Soybean	endoplasmic reticulum	85.84	85.84
GSMUA_Achr7P15820_001	Banana	cytosol	81.55	84.82
Solyc07g016200.2.1	Tomato	extracellular, plastid	83.69	82.63
PGSC0003DMT400025311	Potato	cytosol	83.69	82.63
PGSC0003DMT400035591	Potato	cytosol	83.26	82.2
GSMUA_Achr5P24110_001	Banana	cytosol	81.97	81.97
Os02t0770000-01	Rice	cytosol	78.54	74.39
EER89160	Sorghum	cytosol	77.25	73.47
EES14124	Sorghum	cytosol	77.25	73.47
Zm00001d036108_P001	Maize	cytosol	78.11	73.39
Zm00001d045403_P001	Maize	cytosol	77.68	73.28
Os06t0139900-01	Rice	cytosol, plasma membrane, plastid	77.25	73.17
TraesCS1B01G443900.1	Wheat	cytosol	75.97	72.54
TraesCS7D01G078000.1	Wheat	cytosol, golgi	76.39	72.36
TraesCS7A01G083200.1	Wheat	cytosol	76.39	72.36
TraesCS1D01G421300.1	Wheat	cytosol	75.54	72.13
TraesCS1A01G413900.1	Wheat	cytosol, golgi	75.54	72.13
HORVU7Hr1G018660.1	Barley	cytosol	75.97	71.95
HORVU1Hr1G090810.1	Barley	cytosol	75.11	71.72
TraesCS4A01G381500.1	Wheat	cytosol	76.82	67.55
CDX83281	Canola	extracellular	18.45	32.09
CDY34146	Canola	cytosol	28.33	24.18
CDY26610	Canola	cytosol	26.18	22.26
CDY34594	Canola	cytosol	25.75	21.9
CDX98014	Canola	extracellular	25.75	21.9
CDY16054	Canola	extracellular	25.75	21.9
CDY19402	Canola	cytosol	25.75	21.9
CDY21081	Canola	extracellular	25.75	21.9
CDX83694	Canola	golgi	27.9	19.64
CDY03969	Canola	extracellular	27.47	19.51
CDY70092	Canola	cytosol	5.15	14.46
CDY13711	Canola	cytosol	27.9	12.38

Protein Annotations

MapMan:19.2.6.1.2.1	Gene3D:3.60.20.10	GO:A0A078GSR5	UniProt:A0A078GSR5	unigene:Bna.3813	ProteinID:CDY23291.1
EnsemblPlants:CDY28254	ProteinID:CDY28254	ProteinID:CDY28254.1	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824
GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	EnsemblPlantsGene:GSBRNA2T00039990001
InterPro:IPR023333	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PRINTS:PR00141	ScanProsite:PS00854
PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF102	InterPro:Pept_T1A_subB	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type
InterPro:Proteasome_sua/b	SUPFAM:SSF56235	MEROPS:T01.010	UniParc:UPI0001E7A3DC	SEG:seg	:

Description

BnaA01g05950DProteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A078GSR5]

Coordinates

chrLK032216:+:485483..487926

Molecular Weight (calculated)

25142.9 Da

IEP (calculated)

5.006

GRAVY (calculated)

-0.097

Length

233 amino acids

Sequence
(BLAST)

001: MDLNLDAPHS MGTTIIGVTY NGGVVLGADS RTSTGMYVAN RASDKITQLT DNVYVCRSGS AADSQVVSDY VRYFLHQHTI QLGQPATVKV SANLIRMLAY
101: NNKNMLQTGL IVGGWDKYEG GKIYGIPLGG TVVEQPFAIG GSGSSYLYGF FDQAWKENMT KEEAEQLVVK AVSLAIARDG ASGGVVRTVI INSEGVTRNF
201: YPGDKLQLWH EELEPQNSLL DILNAAGPEP MAM

Best Arabidopsis Sequence Match ( AT4G31300.3 )
(BLAST)

001: MDLNLDAPHS MGTTIIGVTY NGGVVLGADS RTSTGMYVAN RASDKITQLT DNVYVCRSGS AADSQVVSDY VRYFLHQHTI QHGQPATVKV SANLIRMLAY
101: NNKNMLQTGL IVGGWDKYEG GKIYGIPLGG TVVEQPFAIG GSGSSYLYGF FDQAWKDNMT KEEAEQLVVK AVSLAIARDG ASGGVVRTVI INSEGVTRNF
201: YPGDKLQLWH EELEPQNSLL DILNAAGPEP MAM

Arabidopsis Description

PBA1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:F4JRY2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.