Factsheet for VIT_04s0008g02850.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P15820_001	Banana	cytosol	88.34	87.95
VIT_11s0065g00320.t01	Wine grape	cytosol	89.69	86.21
Bra011257.1-P	Field mustard	cytosol	88.79	84.98
Bra010243.1-P	Field mustard	cytosol	88.34	84.55
KRH61963	Soybean	endoplasmic reticulum	88.34	84.55
CDX68732	Canola	cytosol	88.34	84.55
CDY23291	Canola	cytosol	88.34	84.55
CDY28254	Canola	cytosol	88.34	84.55
CDY36450	Canola	cytosol	87.89	84.12
CDY13421	Canola	cytosol	87.44	83.69
Bra024015.1-P	Field mustard	cytosol	87.44	83.69
CDX72300	Canola	cytosol	87.0	83.26
KRH52623	Soybean	cytosol, nucleus	87.0	83.26
GSMUA_Achr5P24110_001	Banana	cytosol	86.1	82.4
AT4G31300.2	Thale cress	cytosol	86.1	82.05
HORVU1Hr1G090810.1	Barley	cytosol	77.13	70.49
TraesCS1A01G413900.1	Wheat	cytosol, golgi	76.68	70.08
HORVU7Hr1G018660.1	Barley	cytosol	77.13	69.92
TraesCS7A01G083200.1	Wheat	cytosol	77.13	69.92
Os02t0770000-01	Rice	cytosol	77.13	69.92
TraesCS1B01G443900.1	Wheat	cytosol	76.23	69.67
TraesCS7D01G078000.1	Wheat	cytosol, golgi	76.68	69.51
EES14124	Sorghum	cytosol	76.23	69.39
EER89160	Sorghum	cytosol	76.23	69.39
Zm00001d036108_P001	Maize	cytosol	77.13	69.35
TraesCS1D01G421300.1	Wheat	cytosol	75.78	69.26
Zm00001d045403_P001	Maize	cytosol	76.68	69.23
Os06t0139900-01	Rice	cytosol, plasma membrane, plastid	76.23	69.11
TraesCS4A01G381500.1	Wheat	cytosol	76.68	64.53
VIT_01s0137g00420.t01	Wine grape	cytosol	28.7	23.44
VIT_01s0010g02900.t01	Wine grape	cytosol	26.01	21.32

Protein Annotations

EntrezGene:100266463	wikigene:100266463	MapMan:19.2.6.1.2.1	Gene3D:3.60.20.10	ProteinID:CBI20801	ProteinID:CBI20801.3
UniProt:D7SU52	EMBL:FN595231	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175
GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005839	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	InterPro:IPR023333	InterPro:IPR029055
EntrezGene:LOC100266463	wikigene:LOC100266463	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PRINTS:PR00141	ScanProsite:PS00854
PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF100	InterPro:Pept_T1A_subB	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type
InterPro:Proteasome_sua/b	SUPFAM:SSF56235	MEROPS:T01.010	TIGR:TC53105	UniParc:UPI0001BE1C89	ArrayExpress:VIT_04s0008g02850
EnsemblPlantsGene:VIT_04s0008g02850	EnsemblPlants:VIT_04s0008g02850.t01	unigene:Vvi.5613	RefSeq:XP_002283195	RefSeq:XP_002283195.1	SEG:seg

Description

Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:D7SU52]

Coordinates

chr4:-:2365579..2368890

Molecular Weight (calculated)

24036.6 Da

IEP (calculated)

5.238

GRAVY (calculated)

-0.049

Length

223 amino acids

Sequence
(BLAST)

001: MGTTIIGVTY NGGVVLGADS RTSTGMYVAN RASDKITQLT DNVYICRSGS AADSQIVSDY VRYFLHQHTI QLGQPATVKV AANLVRLVSY NNKNMLETGL
101: IVGGWDKYEG GKIYAIPLGG TIIEQPFAIG GSGSTYLYGF FDQAWKEGMT KDEAEQLVVK AVSLAIARDG ASGGVIRTVI INSEGVTRNF YPGDSLPLWH
201: EELPPQNSLL ELLHSSSPEP MNV

Best Arabidopsis Sequence Match ( AT4G31300.3 )
(BLAST)

001: MDLNLDAPHS MGTTIIGVTY NGGVVLGADS RTSTGMYVAN RASDKITQLT DNVYVCRSGS AADSQVVSDY VRYFLHQHTI QHGQPATVKV SANLIRMLAY
101: NNKNMLQTGL IVGGWDKYEG GKIYGIPLGG TVVEQPFAIG GSGSSYLYGF FDQAWKDNMT KEEAEQLVVK AVSLAIARDG ASGGVVRTVI INSEGVTRNF
201: YPGDKLQLWH EELEPQNSLL DILNAAGPEP MAM

Arabidopsis Description

PBA1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:F4JRY2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.