CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 4
vacuole 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
extracellular: 22945350
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 22945350 doi

C Liao, F Hochholdinger, C Li

Key Laboratory of Plant-Soil Interactions, Ministry of Education, Center for Resources, Environment and Food Security, China Agricultural University, Beijing, China.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52623	Soybean	cytosol, nucleus	98.28	98.28
VIT_04s0008g02850.t01	Wine grape	cytosol	84.55	88.34
GSMUA_Achr7P15820_001	Banana	cytosol	82.83	86.16
Bra010243.1-P	Field mustard	cytosol	85.84	85.84
CDY28254	Canola	cytosol	85.84	85.84
CDY23291	Canola	cytosol	85.84	85.84
CDX68732	Canola	cytosol	85.84	85.84
Bra024015.1-P	Field mustard	cytosol	85.84	85.84
CDY13421	Canola	cytosol	85.84	85.84
Bra011257.1-P	Field mustard	cytosol	85.84	85.84
CDX72300	Canola	cytosol	85.41	85.41
CDY36450	Canola	cytosol	85.41	85.41
GSMUA_Achr5P24110_001	Banana	cytosol	84.12	84.12
AT4G31300.2	Thale cress	cytosol	84.12	83.76
PGSC0003DMT400025311	Potato	cytosol	81.55	80.51
Solyc07g016200.2.1	Tomato	extracellular, plastid	81.12	80.08
PGSC0003DMT400035591	Potato	cytosol	80.69	79.66
TraesCS1A01G413900.1	Wheat	cytosol, golgi	75.97	72.54
HORVU1Hr1G090810.1	Barley	cytosol	75.97	72.54
TraesCS7A01G083200.1	Wheat	cytosol	76.39	72.36
HORVU7Hr1G018660.1	Barley	cytosol	76.39	72.36
EES14124	Sorghum	cytosol	75.97	72.24
EER89160	Sorghum	cytosol	75.97	72.24
TraesCS1B01G443900.1	Wheat	cytosol	75.54	72.13
TraesCS7D01G078000.1	Wheat	cytosol, golgi	75.97	71.95
Os06t0139900-01	Rice	cytosol, plasma membrane, plastid	75.97	71.95
TraesCS1D01G421300.1	Wheat	cytosol	75.11	71.72
Os02t0770000-01	Rice	cytosol	75.54	71.54
Zm00001d036108_P001	Maize	cytosol	75.97	71.37
Zm00001d045403_P001	Maize	cytosol	75.54	71.26
TraesCS4A01G381500.1	Wheat	cytosol	76.39	67.17
KRH73888	Soybean	cytosol, nucleus	28.76	24.72
KRH14247	Soybean	cytosol	28.76	24.72
KRH63751	Soybean	cytosol	25.75	22.06
KRH54198	Soybean	nucleus	25.75	22.06

Protein Annotations

EntrezGene:100793551	MapMan:19.2.6.1.2.1	Gene3D:3.60.20.10	UniProt:A0A0R4J321	EMBL:ACUP02002203	EnsemblPlantsGene:GLYMA_04G077400
GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	GO:GO:0051603	InterPro:IPR023333	InterPro:IPR029055	EnsemblPlants:KRH61963	ProteinID:KRH61963
ProteinID:KRH61963.1	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PRINTS:PR00141	ScanProsite:PS00854	PFscan:PS51476
PANTHER:PTHR11599	PANTHER:PTHR11599:SF100	InterPro:Pept_T1A_subB	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b
SUPFAM:SSF56235	UniParc:UPI000151E3F5	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:6499898..6503759

Molecular Weight (calculated)

25129.7 Da

IEP (calculated)

5.007

GRAVY (calculated)

-0.118

Length

233 amino acids

Sequence
(BLAST)

001: MDQKVDFSAP HSMGTTIIGV TYNGGVVLGA DSRTSTGVYV ANRASDKITQ LTDNVYVCRS GSAADSQIVS DYVRYFLHQH TIQLGQPATV KVAANLVRLL
101: SYNNKNFLET GLIVGGWDKY EGGQIYGVPL GGTIVQQPFA IGGSGSSYLY GFFDQAWKEG MTKDEAEDLV KKAVSLAIAR DGASGGVVRT VIINSEGVTR
201: NFYPGDQLPL WHEEMEPHNS LLDILGAPEP MSM

Best Arabidopsis Sequence Match ( AT4G31300.3 )
(BLAST)

001: MDLNLDAPHS MGTTIIGVTY NGGVVLGADS RTSTGMYVAN RASDKITQLT DNVYVCRSGS AADSQVVSDY VRYFLHQHTI QHGQPATVKV SANLIRMLAY
101: NNKNMLQTGL IVGGWDKYEG GKIYGIPLGG TVVEQPFAIG GSGSSYLYGF FDQAWKDNMT KEEAEQLVVK AVSLAIARDG ASGGVVRTVI INSEGVTRNF
201: YPGDKLQLWH EELEPQNSLL DILNAAGPEP MAM

Arabidopsis Description

PBA1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:F4JRY2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.