Factsheet for Zm00001d036108_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045403_P001	Maize	cytosol	94.76	95.14
EER89160	Sorghum	cytosol	93.55	94.69
EES14124	Sorghum	cytosol	93.15	94.29
Os06t0139900-01	Rice	cytosol, plasma membrane, plastid	89.11	89.84
Os02t0770000-01	Rice	cytosol	87.1	87.8
TraesCS1B01G443900.1	Wheat	cytosol	85.08	86.48
TraesCS1D01G421300.1	Wheat	cytosol	84.68	86.07
TraesCS1A01G413900.1	Wheat	cytosol, golgi	84.68	86.07
HORVU1Hr1G090810.1	Barley	cytosol	83.87	85.25
TraesCS7D01G078000.1	Wheat	cytosol, golgi	84.27	84.96
HORVU7Hr1G018660.1	Barley	cytosol	83.87	84.55
GSMUA_Achr7P15820_001	Banana	cytosol	75.81	83.93
TraesCS7A01G083200.1	Wheat	cytosol	83.06	83.74
GSMUA_Achr5P24110_001	Banana	cytosol	75.81	80.69
CDY36450	Canola	cytosol	73.79	78.54
CDY13421	Canola	cytosol	73.39	78.11
Bra010243.1-P	Field mustard	cytosol	73.39	78.11
Bra011257.1-P	Field mustard	cytosol	73.39	78.11
CDY23291	Canola	cytosol	73.39	78.11
CDY28254	Canola	cytosol	73.39	78.11
CDX68732	Canola	cytosol	73.39	78.11
Bra024015.1-P	Field mustard	cytosol	73.39	78.11
VIT_11s0065g00320.t01	Wine grape	cytosol	72.98	78.02
CDX72300	Canola	cytosol	72.98	77.68
TraesCS4A01G381500.1	Wheat	cytosol	82.66	77.36
VIT_04s0008g02850.t01	Wine grape	cytosol	69.35	77.13
Solyc07g016200.2.1	Tomato	extracellular, plastid	73.39	77.12
PGSC0003DMT400025311	Potato	cytosol	73.39	77.12
KRH52623	Soybean	cytosol, nucleus	71.77	76.39
KRH61963	Soybean	endoplasmic reticulum	71.37	75.97
AT4G31300.2	Thale cress	cytosol	71.37	75.64
PGSC0003DMT400035591	Potato	cytosol	70.56	74.15
PGSC0003DMT400051560	Potato	cytosol	25.0	48.44
Zm00001d019262_P001	Maize	cytosol	26.61	24.18
Zm00001d045315_P003	Maize	cytosol	24.6	21.11
Zm00001d035915_P001	Maize	extracellular	26.61	15.38

Protein Annotations

EntrezGene:100191806	MapMan:19.2.6.1.2.1	Gene3D:3.60.20.10	UniProt:A0A1D6LKR2	ProteinID:AQK80296.1	GO:GO:0000502
GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005839	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	InterPro:IPR023333	InterPro:IPR029055	InterPro:Ntn_hydrolases_N
PFAM:PF00227	PRINTS:PR00141	PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF102	InterPro:Pept_T1A_subB
InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	UniParc:UPI000843966A	EnsemblPlantsGene:Zm00001d036108	EnsemblPlants:Zm00001d036108_P001
EnsemblPlants:Zm00001d036108_T001	:	:	:	:	:

Description

Proteasome subunit beta type-6

Coordinates

chr6:-:72487379..72490870

Molecular Weight (calculated)

26496.6 Da

IEP (calculated)

5.581

GRAVY (calculated)

-0.059

Length

248 amino acids

Sequence
(BLAST)

001: MDVSHAGSSV AGEAPTTGEH RMGTTIVGVC YEGGVVLGAD SRTSTGMYVA NRASDKITQL TDNVYVCRSG SVSAIAADTQ VISDYVRYFL HQHTIQLGQP
101: ATVKVAANLI RLLAYQNKNM LQAGMIVGGW DKYEGGQIFS VPLGGTILKQ PFAIGGSGSS YLYALLDHEW KEGMSQEEAE KFVVKVVSLA MARDGASGGV
201: VRTVTINADG VKRNFYPGDK LPLWHDELEP QNSLLDILAA GNPDPMVQ

Best Arabidopsis Sequence Match ( AT4G31300.3 )
(BLAST)

001: MDLNLDAPHS MGTTIIGVTY NGGVVLGADS RTSTGMYVAN RASDKITQLT DNVYVCRSGS AADSQVVSDY VRYFLHQHTI QHGQPATVKV SANLIRMLAY
101: NNKNMLQTGL IVGGWDKYEG GKIYGIPLGG TVVEQPFAIG GSGSSYLYGF FDQAWKDNMT KEEAEQLVVK AVSLAIARDG ASGGVVRTVI INSEGVTRNF
201: YPGDKLQLWH EELEPQNSLL DILNAAGPEP MAM

Arabidopsis Description

PBA1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:F4JRY2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.