Factsheet for Zm00001d045315_P003

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d017998_P001
Zm00001d020348_P001
Zm00001d032324_P001
Zm00001d037251_P001
Zm00001d044783_P001
Zm00001d052277_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26340.1	Zm00001d017998_P001	AT1G10530.1	21798944
AT3G26340.1	Zm00001d020348_P001	AT1G10530.1	21798944
AT3G26340.1	Zm00001d032324_P001	AT1G10530.1	21798944
AT3G26340.1	Zm00001d037251_P001	AT1G10530.1	21798944
AT3G26340.1	Zm00001d044783_P001	AT1G10530.1	21798944
AT3G26340.1	Zm00001d052277_P001	AT1G10530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER89220	Sorghum	cytosol	88.24	91.07
Os06t0153800-01	Rice	plasma membrane, plastid	79.24	82.67
TraesCS7B01G008100.1	Wheat	golgi, unclear	76.82	79.57
TraesCS7D01G105500.1	Wheat	cytosol	75.43	78.14
TraesCS7A01G110200.1	Wheat	cytosol	73.7	76.34
HORVU5Hr1G110330.1	Barley	cytosol	73.7	76.34
KRH54198	Soybean	nucleus	69.9	74.26
AT3G26340.1	Thale cress	cytosol	68.86	72.89
VIT_01s0010g02900.t01	Wine grape	cytosol	68.51	72.79
KRH63751	Soybean	cytosol	67.82	72.06
AT1G13060.3	Thale cress	cytosol	67.47	65.44
PGSC0003DMT400038738	Potato	cytosol	26.64	63.64
HORVU7Hr1G022970.1	Barley	plastid	74.05	63.31
Solyc03g063420.1.1	Tomato	mitochondrion	41.18	62.3
Bra022650.1-P	Field mustard	cytosol	20.07	53.21
CDY70092	Canola	cytosol	13.84	48.19
GSMUA_Achr1P13460_001	Banana	cytosol	17.99	36.62
Zm00001d045403_P001	Maize	cytosol	21.45	25.1
Zm00001d036108_P001	Maize	cytosol	21.11	24.6
Zm00001d019262_P001	Maize	cytosol	20.76	21.98
Zm00001d035915_P001	Maize	extracellular	20.76	13.99

Protein Annotations

EntrezGene:100194311	MapMan:19.2.6.1.2.5	Gene3D:3.60.20.10	UniProt:A0A1D6NV82	ProteinID:AQL02035.1	GO:GO:0000502
GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0008150
GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
GO:GO:0051603	InterPro:IPR023333	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PRINTS:PR00141
ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF63	InterPro:Pept_T1A_subB	InterPro:Proteasome_bsu_CS
InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	UniParc:UPI000845650C	EnsemblPlantsGene:Zm00001d045315	EnsemblPlants:Zm00001d045315_P003
EnsemblPlants:Zm00001d045315_T003	:	:	:	:	:

Description

Proteasome subunit beta type

Coordinates

chr9:+:18806534..18809336

Molecular Weight (calculated)

30987.7 Da

IEP (calculated)

5.352

GRAVY (calculated)

-0.117

Length

289 amino acids

Sequence
(BLAST)

001: MAMKLDMSAL ETNFANLTAS AGDDTYFSAE APDVPSMVLP ICDDFDGFQA ATKDMVKNKK GTTTLAFIFD KGVIVAADSR ASMGGYISSQ TVRKIIEINP
101: YMLGTMAGGA ADCQFWHRNL GTKGGANIGS FQCRLHELSN KRRISIAGAS KLLANILYSY RGMGLSIGTM IAGWDEKGPG LYYVDSEGAR LVGNRFSVGS
201: GSLYAYGILD DGYRFSMSVE EAAELARRAI YGATFRDAAS GGCVSVYHVG PDGWTKLSGD DVGELHYHYY PVQKTPVEQE MADAPTASA

Best Arabidopsis Sequence Match ( AT1G13060.1 )
(BLAST)

001: MKLDTSGFET SMPMIGFGSS SDMLDELSSV PSFDLPRTKE FDGFQKKAKD MLKHAKGTTT LAFIFKGGVM VAADSRASMG GYISSQSVKK IIEINPYMLG
101: TMAGGAADCQ FWHRNLGIKC RLHELANKRR ISVSGASKLL ANMLYSYRGM GLSVGTMIAG WDETGPGLYY VDNEGGRLKG DRFSVGSGSP YAYGVLDSGY
201: KYDMSVEEAS ELARRSIYHA TFRDGASGGV ASVYHVGPEG WTKLSGDDVG ELHYHYYPVA PATAEQVMEE ATAE

Arabidopsis Description

PBE120S proteasome beta subunit E1 [Source:UniProtKB/TrEMBL;Acc:F4HP14]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.