Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16054 | Canola | extracellular | 91.21 | 90.88 |
| CDY21081 | Canola | extracellular | 90.84 | 90.51 |
| CDY26610 | Canola | cytosol | 90.84 | 90.51 |
| CDY34594 | Canola | cytosol | 90.48 | 90.15 |
| CDX98014 | Canola | extracellular | 90.48 | 90.15 |
| CDY19402 | Canola | cytosol | 90.48 | 90.15 |
| Bra019807.1-P | Field mustard | cytosol | 90.11 | 89.78 |
| Bra026938.1-P | Field mustard | cytosol | 73.63 | 87.77 |
| VIT_01s0010g02900.t01 | Wine grape | cytosol | 86.08 | 86.4 |
| HORVU1Hr1G053910.1 | Barley | cytosol | 11.36 | 86.11 |
| KRH54198 | Soybean | nucleus | 81.69 | 81.99 |
| AT1G13060.3 | Thale cress | cytosol | 89.38 | 81.88 |
| PGSC0003DMT400059981 | Potato | cytosol | 81.32 | 81.62 |
| KRH63751 | Soybean | cytosol | 81.32 | 81.62 |
| Solyc05g056160.2.1 | Tomato | extracellular | 81.32 | 81.32 |
| Os06t0153800-01 | Rice | plasma membrane, plastid | 71.79 | 70.76 |
| Zm00001d045315_P003 | Maize | cytosol | 72.89 | 68.86 |
| TraesCS7B01G008100.1 | Wheat | golgi, unclear | 70.33 | 68.82 |
| EER89220 | Sorghum | cytosol | 70.33 | 68.57 |
| TraesCS7D01G105500.1 | Wheat | cytosol | 69.23 | 67.74 |
| HORVU5Hr1G110330.1 | Barley | cytosol | 68.13 | 66.67 |
| TraesCS7A01G110200.1 | Wheat | cytosol | 68.13 | 66.67 |
| HORVU7Hr1G022970.1 | Barley | plastid | 69.23 | 55.92 |
| GSMUA_Achr6P28520_001 | Banana | extracellular | 17.22 | 50.0 |
| AT4G31300.2 | Thale cress | cytosol | 21.98 | 25.64 |
| AT3G27430.2 | Thale cress | cytosol | 23.44 | 23.44 |
| AT5G40580.1 | Thale cress | cytosol | 23.08 | 22.99 |
Protein Annotations
| MapMan:19.2.6.1.2.5 | Gene3D:3.60.20.10 | EntrezGene:822238 | UniProt:A0A178VFG8 | ProteinID:AEE77147.1 | EMBL:AF439846 |
| ArrayExpress:AT3G26340 | EnsemblPlantsGene:AT3G26340 | RefSeq:AT3G26340 | TAIR:AT3G26340 | RefSeq:AT3G26340-TAIR-G | EnsemblPlants:AT3G26340.1 |
| TAIR:AT3G26340.1 | EMBL:AY085678 | EMBL:AY125569 | ProteinID:BAB02194.1 | GO:GO:0000502 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004175 | GO:GO:0004298 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005839 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008233 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0019774 |
| GO:GO:0051603 | InterPro:IPR023333 | InterPro:IPR029055 | RefSeq:NP_189265.1 | InterPro:Ntn_hydrolases_N | ProteinID:OAP03733.1 |
| PFAM:PF00227 | PO:PO:0000293 | PRINTS:PR00141 | ScanProsite:PS00854 | PFscan:PS51476 | PANTHER:PTHR11599 |
| PANTHER:PTHR11599:SF63 | InterPro:Pept_T1A_subB | InterPro:Proteasome_bsu_CS | InterPro:Proteasome_suB-type | InterPro:Proteasome_sua/b | UniProt:Q9LIP2 |
| SUPFAM:SSF56235 | MEROPS:T01.A10 | UniParc:UPI00000AB461 | : | : | : |
Description
PBE2Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178VFG8]
Coordinates
chr3:-:9650316..9652936
Molecular Weight (calculated)
29487.0 Da
IEP (calculated)
6.163
GRAVY (calculated)
-0.200
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLDTSGLET TMPVIGFGSN SEMLDGFSSA PSFDLPRTTD FDGFQKKAVE MVKPAKGTTT LAFIFKEGVM VAADSRASMG GYISSQSVKK IIEINPYMLG
101: TMAGGAADCQ FWHRNLGIKC RLHELANKRR ISVSGASKLL ANMLYSYRGM GLSVGTMIAG WDETGPGLYY VDNEGGRLKG DRFSVGSGSP YAYGVLDSGY
201: KFDMSVEEAS ELARRSIYHA TFRDGASGGV ASVYHVGPQG WTKLSGDDVG ELHYHYYPVA PITAEHVMEE AAE
101: TMAGGAADCQ FWHRNLGIKC RLHELANKRR ISVSGASKLL ANMLYSYRGM GLSVGTMIAG WDETGPGLYY VDNEGGRLKG DRFSVGSGSP YAYGVLDSGY
201: KFDMSVEEAS ELARRSIYHA TFRDGASGGV ASVYHVGPQG WTKLSGDDVG ELHYHYYPVA PITAEHVMEE AAE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.