Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G27430.2 | Thale cress | cytosol | 92.34 | 92.67 |
| KRH14247 | Soybean | cytosol | 83.21 | 84.13 |
| KRH73888 | Soybean | cytosol, nucleus | 83.21 | 84.13 |
| VIT_01s0137g00420.t01 | Wine grape | cytosol | 80.66 | 80.95 |
| Os05t0187000-01 | Rice | plastid | 78.83 | 79.41 |
| Zm00001d019262_P001 | Maize | cytosol | 78.83 | 79.12 |
| GSMUA_Achr9P20290_001 | Banana | cytosol | 78.83 | 79.12 |
| Solyc05g013820.2.1 | Tomato | nucleus | 71.9 | 79.12 |
| EER98255 | Sorghum | cytosol | 78.47 | 78.75 |
| KXG19118 | Sorghum | cytosol | 77.74 | 78.02 |
| Solyc04g024420.2.1 | Tomato | cytosol, extracellular | 77.74 | 78.02 |
| GSMUA_Achr7P03760_001 | Banana | cytosol | 77.74 | 77.74 |
| PGSC0003DMT400034355 | Potato | cytosol, mitochondrion | 49.63 | 77.27 |
| TraesCS1A01G122700.1 | Wheat | cytosol | 76.64 | 77.21 |
| TraesCS1D01G123600.1 | Wheat | cytosol, golgi, unclear | 76.64 | 77.21 |
| TraesCS1B01G141900.1 | Wheat | cytosol | 76.28 | 76.84 |
| HORVU1Hr1G028190.1 | Barley | plastid | 76.28 | 65.93 |
| PGSC0003DMT400043694 | Potato | cytosol | 77.01 | 63.94 |
| OQU86162 | Sorghum | plastid | 32.48 | 56.33 |
| Zm00001d035915_P001 | Maize | extracellular | 77.74 | 49.65 |
| AT4G31300.2 | Thale cress | cytosol | 24.09 | 28.21 |
| AT3G26340.1 | Thale cress | cytosol | 22.99 | 23.08 |
| AT1G13060.3 | Thale cress | cytosol | 22.99 | 21.14 |
Protein Annotations
| MapMan:19.2.6.1.2.2 | Gene3D:3.60.20.10 | EntrezGene:834056 | UniProt:A0A178UKG7 | ProteinID:AED94567.1 | ProteinID:AED94568.1 |
| EMBL:AF043531 | ArrayExpress:AT5G40580 | EnsemblPlantsGene:AT5G40580 | RefSeq:AT5G40580 | TAIR:AT5G40580 | RefSeq:AT5G40580-TAIR-G |
| EnsemblPlants:AT5G40580.1 | TAIR:AT5G40580.1 | EMBL:AY087750 | EMBL:AY093011 | EMBL:AY114591 | Unigene:At.47287 |
| ProteinID:BAB08528.1 | GO:GO:0000166 | GO:GO:0000502 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 |
| GO:GO:0004175 | GO:GO:0004298 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005839 | GO:GO:0006508 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008233 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 |
| GO:GO:0019774 | GO:GO:0051603 | InterPro:IPR023333 | InterPro:IPR029055 | RefSeq:NP_198874.1 | RefSeq:NP_851108.1 |
| InterPro:Ntn_hydrolases_N | ProteinID:OAO94030.1 | Symbol:PBB2 | PFAM:PF00227 | PO:PO:0000005 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00141 |
| ScanProsite:PS00854 | PFscan:PS51476 | PANTHER:PTHR11599 | PANTHER:PTHR11599:SF67 | InterPro:Pept_T1A_subB | InterPro:Proteasome_bsu_CS |
| InterPro:Proteasome_suB-type | InterPro:Proteasome_sua/b | UniProt:Q7DLS1 | SUPFAM:SSF56235 | MEROPS:T01.011 | UniParc:UPI00000A3E8B |
| EMBL:Y13177 | : | : | : | : | : |
Description
PBB2Proteasome subunit beta type-7-B [Source:UniProtKB/Swiss-Prot;Acc:Q7DLS1]
Coordinates
chr5:-:16248286..16250805
Molecular Weight (calculated)
29618.7 Da
IEP (calculated)
7.203
GRAVY (calculated)
-0.084
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQSSVDIPP KGGFSFDLCK RNDMLTQKGL KAPSFLKTGT TIVGLIFKDG VILGADTRAT EGPIVADKNC EKIHYMAPNI YCCGAGTAAD TEAVTDMVSS
101: QLRLHRYQTG RDSRVVTALT LLKKHLFSYQ GHVSAALVLG GVDITGPHLH TIYPHGSTDT LPFATMGSGS LAAMSVFEAK YKEGLTRDEG IKLVAEAICS
201: GIFNDLGSGS NVDICVITKG HKEYLRNYME PNPRTYVSSK GYSFTKKTEV LLTKITPLLE RVEIVEVAGE AMEE
101: QLRLHRYQTG RDSRVVTALT LLKKHLFSYQ GHVSAALVLG GVDITGPHLH TIYPHGSTDT LPFATMGSGS LAAMSVFEAK YKEGLTRDEG IKLVAEAICS
201: GIFNDLGSGS NVDICVITKG HKEYLRNYME PNPRTYVSSK GYSFTKKTEV LLTKITPLLE RVEIVEVAGE AMEE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.