Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G40580.1 | Thale cress | cytosol | 92.67 | 92.34 |
| Bra033011.1-P | Field mustard | cytosol | 91.58 | 91.58 |
| CDY34146 | Canola | cytosol | 91.58 | 91.58 |
| CDY03969 | Canola | extracellular | 97.07 | 80.79 |
| KRH73888 | Soybean | cytosol, nucleus | 79.49 | 80.07 |
| KRH14247 | Soybean | cytosol | 79.49 | 80.07 |
| Solyc05g013820.2.1 | Tomato | nucleus | 72.16 | 79.12 |
| CDX83694 | Canola | golgi | 94.87 | 78.25 |
| VIT_01s0137g00420.t01 | Wine grape | cytosol | 78.02 | 78.02 |
| Os05t0187000-01 | Rice | plastid | 76.56 | 76.84 |
| Zm00001d019262_P001 | Maize | cytosol | 76.56 | 76.56 |
| GSMUA_Achr9P20290_001 | Banana | cytosol | 76.56 | 76.56 |
| GSMUA_Achr7P03760_001 | Banana | cytosol | 76.56 | 76.28 |
| EER98255 | Sorghum | cytosol | 75.82 | 75.82 |
| Solyc04g024420.2.1 | Tomato | cytosol, extracellular | 75.82 | 75.82 |
| KXG19118 | Sorghum | cytosol | 75.46 | 75.46 |
| TraesCS1D01G123600.1 | Wheat | cytosol, golgi, unclear | 75.09 | 75.37 |
| TraesCS1A01G122700.1 | Wheat | cytosol | 75.09 | 75.37 |
| TraesCS1B01G141900.1 | Wheat | cytosol | 74.73 | 75.0 |
| PGSC0003DMT400034355 | Potato | cytosol, mitochondrion | 46.52 | 72.16 |
| PGSC0003DMT400043694 | Potato | cytosol | 78.39 | 64.85 |
| HORVU1Hr1G028190.1 | Barley | plastid | 74.73 | 64.35 |
| OQU86162 | Sorghum | plastid | 33.7 | 58.23 |
| Zm00001d035915_P001 | Maize | extracellular | 75.82 | 48.25 |
| CDY13711 | Canola | cytosol | 91.58 | 47.62 |
| Bra025276.1-P | Field mustard | cytosol | 90.48 | 44.83 |
| AT4G31300.2 | Thale cress | cytosol | 23.44 | 27.35 |
| AT3G26340.1 | Thale cress | cytosol | 23.44 | 23.44 |
| AT1G13060.3 | Thale cress | cytosol | 23.44 | 21.48 |
Protein Annotations
| MapMan:19.2.6.1.2.2 | Gene3D:3.60.20.10 | EntrezGene:822364 | UniProt:A0A178VCF7 | ProteinID:AEE77318.1 | ProteinID:AEE77319.1 |
| EMBL:AF043530 | ArrayExpress:AT3G27430 | EnsemblPlantsGene:AT3G27430 | RefSeq:AT3G27430 | TAIR:AT3G27430 | RefSeq:AT3G27430-TAIR-G |
| EnsemblPlants:AT3G27430.2 | TAIR:AT3G27430.2 | EMBL:AY086464 | ProteinID:BAA95719.1 | EMBL:BT003339 | EMBL:BT006306 |
| GO:GO:0000502 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004175 | GO:GO:0004298 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005839 | GO:GO:0006508 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 |
| GO:GO:0019538 | GO:GO:0019774 | GO:GO:0051603 | InterPro:IPR023333 | InterPro:IPR029055 | RefSeq:NP_566818.1 |
| RefSeq:NP_850641.1 | InterPro:Ntn_hydrolases_N | UniProt:O23710 | ProteinID:OAP02633.1 | Symbol:PBB1 | PFAM:PF00227 |
| PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR00141 | ScanProsite:PS00854 | PFscan:PS51476 | PANTHER:PTHR11599 |
| PANTHER:PTHR11599:SF67 | InterPro:Pept_T1A_subB | InterPro:Proteasome_bsu_CS | InterPro:Proteasome_suB-type | InterPro:Proteasome_sua/b | SUPFAM:SSF56235 |
| UniParc:UPI000000BFC0 | EMBL:Y13174 | EMBL:Y13178 | : | : | : |
Description
PBB1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178VCF7]
Coordinates
chr3:+:10152458..10155447
Molecular Weight (calculated)
29556.6 Da
IEP (calculated)
7.149
GRAVY (calculated)
-0.119
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQSTVDVPP KGGFSFDLCK RNDMLTQKGL KAPSFLKTGT TIVGLIFKDG VILGADTRAT EGPIVADKNC EKIHYMAPNI YCCGAGTAAD TEAVTDMVSS
101: QLRLHRYQTG RDSRVITALT LLKKHLFSYQ GHVSAALVLG GVDITGPHLH TIYPHGSTDT LPFATMGSGS LAAMSVFEAK YKEGLTRDEG IKLVAESICS
201: GIFNDLGSGS NVDICVITKG NKEYLRNYME PNPRTYVSSK GYSFTKKTEV LLTKITPLLE RVEITEVGEA MEE
101: QLRLHRYQTG RDSRVITALT LLKKHLFSYQ GHVSAALVLG GVDITGPHLH TIYPHGSTDT LPFATMGSGS LAAMSVFEAK YKEGLTRDEG IKLVAESICS
201: GIFNDLGSGS NVDICVITKG NKEYLRNYME PNPRTYVSSK GYSFTKKTEV LLTKITPLLE RVEITEVGEA MEE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.