Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024015.1-P | Field mustard | cytosol | 97.01 | 97.42 |
| CDY13421 | Canola | cytosol | 97.01 | 97.42 |
| CDX72300 | Canola | cytosol | 96.58 | 97.0 |
| CDY36450 | Canola | cytosol | 96.15 | 96.57 |
| Bra011257.1-P | Field mustard | cytosol | 96.15 | 96.57 |
| Bra010243.1-P | Field mustard | cytosol | 94.02 | 94.42 |
| CDX68732 | Canola | cytosol | 94.02 | 94.42 |
| CDY23291 | Canola | cytosol | 94.02 | 94.42 |
| CDY28254 | Canola | cytosol | 94.02 | 94.42 |
| VIT_04s0008g02850.t01 | Wine grape | cytosol | 82.05 | 86.1 |
| KRH52623 | Soybean | cytosol, nucleus | 84.19 | 84.55 |
| KRH61963 | Soybean | endoplasmic reticulum | 83.76 | 84.12 |
| GSMUA_Achr7P15820_001 | Banana | cytosol | 79.91 | 83.48 |
| GSMUA_Achr5P24110_001 | Banana | cytosol | 81.2 | 81.55 |
| PGSC0003DMT400025311 | Potato | cytosol | 81.2 | 80.51 |
| Solyc07g016200.2.1 | Tomato | extracellular, plastid | 80.34 | 79.66 |
| PGSC0003DMT400035591 | Potato | cytosol | 80.34 | 79.66 |
| Os02t0770000-01 | Rice | cytosol | 75.64 | 71.95 |
| EES14124 | Sorghum | cytosol | 74.79 | 71.43 |
| EER89160 | Sorghum | cytosol | 74.79 | 71.43 |
| Zm00001d036108_P001 | Maize | cytosol | 75.64 | 71.37 |
| Zm00001d045403_P001 | Maize | cytosol | 75.21 | 71.26 |
| Os06t0139900-01 | Rice | cytosol, plasma membrane, plastid | 74.79 | 71.14 |
| TraesCS1B01G443900.1 | Wheat | cytosol | 73.5 | 70.49 |
| TraesCS7D01G078000.1 | Wheat | cytosol, golgi | 73.93 | 70.33 |
| TraesCS1A01G413900.1 | Wheat | cytosol, golgi | 73.08 | 70.08 |
| TraesCS1D01G421300.1 | Wheat | cytosol | 73.08 | 70.08 |
| HORVU7Hr1G018660.1 | Barley | cytosol | 73.5 | 69.92 |
| TraesCS7A01G083200.1 | Wheat | cytosol | 73.5 | 69.92 |
| HORVU1Hr1G090810.1 | Barley | cytosol | 72.65 | 69.67 |
| TraesCS4A01G381500.1 | Wheat | cytosol | 74.79 | 66.04 |
| AT5G40580.1 | Thale cress | cytosol | 28.21 | 24.09 |
| AT3G27430.2 | Thale cress | cytosol | 27.35 | 23.44 |
| AT3G26340.1 | Thale cress | cytosol | 25.64 | 21.98 |
| AT1G13060.3 | Thale cress | cytosol | 27.35 | 21.48 |
Protein Annotations
| MapMan:19.2.6.1.2.1 | Gene3D:3.60.20.10 | EntrezGene:829257 | ProteinID:AEE85888.1 | ArrayExpress:AT4G31300 | EnsemblPlantsGene:AT4G31300 |
| RefSeq:AT4G31300 | TAIR:AT4G31300 | RefSeq:AT4G31300-TAIR-G | EnsemblPlants:AT4G31300.2 | TAIR:AT4G31300.2 | Unigene:At.24496 |
| UniProt:F4JRY2 | GO:GO:0000502 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004175 | GO:GO:0004298 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005773 |
| GO:GO:0005774 | GO:GO:0005829 | GO:GO:0005839 | GO:GO:0006508 | GO:GO:0006950 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008219 | GO:GO:0008233 | GO:GO:0009056 | GO:GO:0009628 | GO:GO:0009651 |
| GO:GO:0009987 | GO:GO:0010043 | GO:GO:0010363 | GO:GO:0016020 | GO:GO:0016787 | GO:GO:0019538 |
| GO:GO:0051603 | InterPro:IPR023333 | InterPro:IPR029055 | RefSeq:NP_001031759.1 | InterPro:Ntn_hydrolases_N | Symbol:PBA1 |
| PFAM:PF00227 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001170 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00141 | ScanProsite:PS00854 |
| PFscan:PS51476 | PANTHER:PTHR11599 | PANTHER:PTHR11599:SF102 | InterPro:Pept_T1A_subB | InterPro:Proteasome_bsu_CS | InterPro:Proteasome_suB-type |
| InterPro:Proteasome_sua/b | SUPFAM:SSF56235 | UniParc:UPI00005DC0B8 | SEG:seg | : | : |
Description
PBA1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:F4JRY2]
Coordinates
chr4:+:15188763..15191153
Molecular Weight (calculated)
25281.0 Da
IEP (calculated)
5.241
GRAVY (calculated)
-0.141
Length
234 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLNLDAPHS MGTTIIGVTY NGGVVLGADS RTSTGMYVAN RASDKITQLT DNVYVCRSGS AADSQVVSDY VRYFLHQHTI QHGQPATVKV SANLIRMLAY
101: NNKQNMLQTG LIVGGWDKYE GGKIYGIPLG GTVVEQPFAI GGSGSSYLYG FFDQAWKDNM TKEEAEQLVV KAVSLAIARD GASGGVVRTV IINSEGVTRN
201: FYPGDKLQLW HEELEPQNSL LDILNAAGPE PMAM
101: NNKQNMLQTG LIVGGWDKYE GGKIYGIPLG GTVVEQPFAI GGSGSSYLYG FFDQAWKDNM TKEEAEQLVV KAVSLAIARD GASGGVVRTV IINSEGVTRN
201: FYPGDKLQLW HEELEPQNSL LDILNAAGPE PMAM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.