Factsheet for PGSC0003DMT400025311

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g016200.2.1	Tomato	extracellular, plastid	95.76	95.76
VIT_11s0065g00320.t01	Wine grape	cytosol	83.47	84.91
GSMUA_Achr7P15820_001	Banana	cytosol	80.51	84.82
Bra011257.1-P	Field mustard	cytosol	83.05	84.12
PGSC0003DMT400035591	Potato	cytosol	83.9	83.9
Bra010243.1-P	Field mustard	cytosol	82.63	83.69
Bra024015.1-P	Field mustard	cytosol	82.63	83.69
CDX68732	Canola	cytosol	82.63	83.69
CDY13421	Canola	cytosol	82.63	83.69
CDY23291	Canola	cytosol	82.63	83.69
CDY28254	Canola	cytosol	82.63	83.69
CDY36450	Canola	cytosol	82.2	83.26
CDX72300	Canola	cytosol	82.2	83.26
GSMUA_Achr5P24110_001	Banana	cytosol	80.93	81.97
KRH52623	Soybean	cytosol, nucleus	80.51	81.55
KRH61963	Soybean	endoplasmic reticulum	80.51	81.55
AT4G31300.2	Thale cress	cytosol	80.51	81.2
Os02t0770000-01	Rice	cytosol	77.54	74.39
Os06t0139900-01	Rice	cytosol, plasma membrane, plastid	77.12	73.98
EER89160	Sorghum	cytosol	76.69	73.88
EES14124	Sorghum	cytosol	76.69	73.88
TraesCS1B01G443900.1	Wheat	cytosol	76.27	73.77
TraesCS7A01G083200.1	Wheat	cytosol	76.69	73.58
Zm00001d036108_P001	Maize	cytosol	77.12	73.39
TraesCS1A01G413900.1	Wheat	cytosol, golgi	75.85	73.36
TraesCS1D01G421300.1	Wheat	cytosol	75.85	73.36
Zm00001d045403_P001	Maize	cytosol	76.69	73.28
TraesCS7D01G078000.1	Wheat	cytosol, golgi	76.27	73.17
HORVU1Hr1G090810.1	Barley	cytosol	75.42	72.95
HORVU7Hr1G018660.1	Barley	cytosol	75.85	72.76
TraesCS4A01G381500.1	Wheat	cytosol	77.12	68.68
PGSC0003DMT400051560	Potato	cytosol	32.2	59.38
PGSC0003DMT400059981	Potato	cytosol	28.81	25.0
PGSC0003DMT400034355	Potato	cytosol, mitochondrion	15.25	20.45
PGSC0003DMT400043694	Potato	cytosol	27.97	20.0
PGSC0003DMT400038738	Potato	cytosol	8.9	17.36

Protein Annotations

EntrezGene:102592103	MapMan:19.2.6.1.2.1	Gene3D:3.60.20.10	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824
GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	InterPro:IPR023333
InterPro:IPR029055	UniProt:M1ALA3	InterPro:Ntn_hydrolases_N	PFAM:PF00227	EnsemblPlantsGene:PGSC0003DMG400009772	PGSC:PGSC0003DMG400009772
EnsemblPlants:PGSC0003DMT400025311	PRINTS:PR00141	ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF102
InterPro:Pept_T1A_subB	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	MEROPS:T01.010
UniParc:UPI000296856E	RefSeq:XP_006365635.1	SEG:seg	:	:	:

Description

Proteasome subunit beta type-6 [Source:PGSC_GENE;Acc:PGSC0003DMG400009772]

Coordinates

chr7:-:9212947..9222495

Molecular Weight (calculated)

25315.0 Da

IEP (calculated)

5.612

GRAVY (calculated)

-0.098

Length

236 amino acids

Sequence
(BLAST)

001: MDKSSLDVEQ PHSMGTTIIG VTYNGGVVLG ADSRTSTGMY VANRASDKIT QLTDNVYVCR SGSAADSQVV SDYVRYFLHQ HTIQLGQPAT VKVAASLVRQ
101: ISYNNKAMLQ TGMIVGGWDK YEGGKIYGVP LGGTLLEQPF AIGGSGSSYL YGFFDQAWRE GMSHEEAEKL VVTAVSLAIA RDGASGGVVR TVTINKDGVK
201: RKFYPGDTLP LWHEEIESVN SLLDIVPAAS PDPMVS

Best Arabidopsis Sequence Match ( AT4G31300.3 )
(BLAST)

001: MDLNLDAPHS MGTTIIGVTY NGGVVLGADS RTSTGMYVAN RASDKITQLT DNVYVCRSGS AADSQVVSDY VRYFLHQHTI QHGQPATVKV SANLIRMLAY
101: NNKNMLQTGL IVGGWDKYEG GKIYGIPLGG TVVEQPFAIG GSGSSYLYGF FDQAWKDNMT KEEAEQLVVK AVSLAIARDG ASGGVVRTVI INSEGVTRNF
201: YPGDKLQLWH EELEPQNSLL DILNAAGPEP MAM

Arabidopsis Description

PBA1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:F4JRY2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.