Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY13421 | Canola | cytosol | 97.42 | 97.42 |
| CDX68732 | Canola | cytosol | 97.0 | 97.0 |
| CDX72300 | Canola | cytosol | 97.0 | 97.0 |
| CDY28254 | Canola | cytosol | 97.0 | 97.0 |
| CDY23291 | Canola | cytosol | 97.0 | 97.0 |
| AT4G31300.2 | Thale cress | cytosol | 96.57 | 96.15 |
| VIT_04s0008g02850.t01 | Wine grape | cytosol | 84.12 | 87.89 |
| KRH52623 | Soybean | cytosol, nucleus | 85.84 | 85.84 |
| KRH61963 | Soybean | endoplasmic reticulum | 85.41 | 85.41 |
| GSMUA_Achr7P15820_001 | Banana | cytosol | 81.12 | 84.38 |
| GSMUA_Achr5P24110_001 | Banana | cytosol | 83.26 | 83.26 |
| PGSC0003DMT400025311 | Potato | cytosol | 83.26 | 82.2 |
| Solyc07g016200.2.1 | Tomato | extracellular, plastid | 82.4 | 81.36 |
| PGSC0003DMT400035591 | Potato | cytosol | 82.4 | 81.36 |
| Os02t0770000-01 | Rice | cytosol | 78.54 | 74.39 |
| EER89160 | Sorghum | cytosol | 77.68 | 73.88 |
| EES14124 | Sorghum | cytosol | 77.68 | 73.88 |
| Zm00001d036108_P001 | Maize | cytosol | 78.54 | 73.79 |
| Zm00001d045403_P001 | Maize | cytosol | 78.11 | 73.68 |
| Os06t0139900-01 | Rice | cytosol, plasma membrane, plastid | 77.68 | 73.58 |
| TraesCS1B01G443900.1 | Wheat | cytosol | 76.39 | 72.95 |
| TraesCS7D01G078000.1 | Wheat | cytosol, golgi | 76.82 | 72.76 |
| TraesCS1A01G413900.1 | Wheat | cytosol, golgi | 75.97 | 72.54 |
| TraesCS1D01G421300.1 | Wheat | cytosol | 75.97 | 72.54 |
| HORVU7Hr1G018660.1 | Barley | cytosol | 76.39 | 72.36 |
| TraesCS7A01G083200.1 | Wheat | cytosol | 76.39 | 72.36 |
| HORVU1Hr1G090810.1 | Barley | cytosol | 75.54 | 72.13 |
| TraesCS4A01G381500.1 | Wheat | cytosol | 77.68 | 68.3 |
| CDX83281 | Canola | extracellular | 18.45 | 32.09 |
| CDY34146 | Canola | cytosol | 29.18 | 24.91 |
| CDY26610 | Canola | cytosol | 26.61 | 22.63 |
| CDY19402 | Canola | cytosol | 26.18 | 22.26 |
| CDX98014 | Canola | extracellular | 26.18 | 22.26 |
| CDY34594 | Canola | cytosol | 26.18 | 22.26 |
| CDY16054 | Canola | extracellular | 26.18 | 22.26 |
| CDY21081 | Canola | extracellular | 26.18 | 22.26 |
| CDX83694 | Canola | golgi | 28.76 | 20.24 |
| CDY03969 | Canola | extracellular | 28.33 | 20.12 |
| CDY70092 | Canola | cytosol | 5.15 | 14.46 |
| CDY13711 | Canola | cytosol | 28.76 | 12.76 |
Protein Annotations
| MapMan:19.2.6.1.2.1 | Gene3D:3.60.20.10 | GO:A0A078HDL1 | UniProt:A0A078HDL1 | unigene:Bna.3813 | EnsemblPlants:CDY36450 |
| ProteinID:CDY36450 | ProteinID:CDY36450.1 | GO:GO:0000502 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004175 |
| GO:GO:0004298 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0005839 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0051603 | EnsemblPlantsGene:GSBRNA2T00062096001 | InterPro:IPR023333 |
| InterPro:IPR029055 | InterPro:Ntn_hydrolases_N | PFAM:PF00227 | PRINTS:PR00141 | ScanProsite:PS00854 | PFscan:PS51476 |
| PANTHER:PTHR11599 | PANTHER:PTHR11599:SF102 | InterPro:Pept_T1A_subB | InterPro:Proteasome_bsu_CS | InterPro:Proteasome_suB-type | InterPro:Proteasome_sua/b |
| SUPFAM:SSF56235 | MEROPS:T01.010 | UniParc:UPI0004EECBD9 | SEG:seg | : | : |
Description
BnaC03g67700DProteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A078HDL1]
Coordinates
chrLK032376:-:148580..150834
Molecular Weight (calculated)
25128.9 Da
IEP (calculated)
5.006
GRAVY (calculated)
-0.098
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLNLDAPHS MGTTIVGVTY NGGVVLGADS RTSTGMYVAN RASDKITQLT DNVYVCRSGS AADSQVVSDY VRYFLHQHTI QLGQPATVKV SANLIRMLAY
101: NNKNMLQTGL IVGGWDKYEG GKIYGIPLGG TVVEQPFAIG GSGSSYLYGF FDQAWKENMT KEEAEQLVVK AVSLAIARDG ASGGVVRTVI INSEGVTRNF
201: YPGDKLQLWH EELEPQNSLL DILNAAGPEP MAM
101: NNKNMLQTGL IVGGWDKYEG GKIYGIPLGG TVVEQPFAIG GSGSSYLYGF FDQAWKENMT KEEAEQLVVK AVSLAIARDG ASGGVVRTVI INSEGVTRNF
201: YPGDKLQLWH EELEPQNSLL DILNAAGPEP MAM
001: MDLNLDAPHS MGTTIIGVTY NGGVVLGADS RTSTGMYVAN RASDKITQLT DNVYVCRSGS AADSQVVSDY VRYFLHQHTI QHGQPATVKV SANLIRMLAY
101: NNKNMLQTGL IVGGWDKYEG GKIYGIPLGG TVVEQPFAIG GSGSSYLYGF FDQAWKDNMT KEEAEQLVVK AVSLAIARDG ASGGVVRTVI INSEGVTRNF
201: YPGDKLQLWH EELEPQNSLL DILNAAGPEP MAM
101: NNKNMLQTGL IVGGWDKYEG GKIYGIPLGG TVVEQPFAIG GSGSSYLYGF FDQAWKDNMT KEEAEQLVVK AVSLAIARDG ASGGVVRTVI INSEGVTRNF
201: YPGDKLQLWH EELEPQNSLL DILNAAGPEP MAM
Arabidopsis Description
PBA1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:F4JRY2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.