CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
mitochondrion 1
endoplasmic reticulum 3
extracellular 3
vacuole 2
plasma membrane 2
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022650.1-P	Field mustard	cytosol	53.73	66.06
CDX98014	Canola	extracellular	79.85	39.05
CDY34594	Canola	cytosol	79.85	39.05
CDY16054	Canola	extracellular	79.85	39.05
CDY19402	Canola	cytosol	79.85	39.05
CDY21081	Canola	extracellular	79.85	39.05
CDY26610	Canola	cytosol	79.85	39.05
CDX72300	Canola	cytosol	32.84	18.88
CDY13421	Canola	cytosol	32.84	18.88
CDX68732	Canola	cytosol	32.09	18.45
CDY36450	Canola	cytosol	32.09	18.45
CDY28254	Canola	cytosol	32.09	18.45
CDY23291	Canola	cytosol	32.09	18.45
CDY34146	Canola	cytosol	26.87	13.19
CDY03969	Canola	extracellular	26.87	10.98
CDX83694	Canola	golgi	26.87	10.88
CDY70092	Canola	cytosol	5.22	8.43
CDY13711	Canola	cytosol	26.87	6.86

Protein Annotations

MapMan:19.2.6.1.2.5	Gene3D:3.60.20.10	GO:A0A078D1P0	EnsemblPlants:CDX83281	ProteinID:CDX83281	ProteinID:CDX83281.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005839	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	EnsemblPlantsGene:GSBRNA2T00138834001	InterPro:IPR029055	InterPro:Ntn_hydrolases_N
PFAM:PF00227	PRINTS:PR00141	PANTHER:PTHR11599	PANTHER:PTHR11599:SF63	InterPro:Pept_T1A_subB	InterPro:Proteasome_sua/b
SUPFAM:SSF56235	MEROPS:T01.A10	TMHMM:TMhelix	UniParc:UPI0004EDDE38	SEG:seg	:

Description

BnaA03g22250D

Coordinates

chrLK031832:+:808339..809237

Molecular Weight (calculated)

14683.5 Da

IEP (calculated)

4.668

GRAVY (calculated)

-0.003

Length

134 amino acids

Sequence
(BLAST)

001: MVAADSRASM GGYICSIGKE AFVLLLLMFL IEWLEELQNM LANMLYSYRR MGLSVSTMIA GWDETGPGLY YVDNEGRRLK GDRFSVGSGS PYAYGVLDSG
101: YKFDMSVEEA SELARRSIYH ATFRDGASGG VASG

Best Arabidopsis Sequence Match ( AT1G13060.1 )
(BLAST)

001: MKLDTSGFET SMPMIGFGSS SDMLDELSSV PSFDLPRTKE FDGFQKKAKD MLKHAKGTTT LAFIFKGGVM VAADSRASMG GYISSQSVKK IIEINPYMLG
101: TMAGGAADCQ FWHRNLGIKC RLHELANKRR ISVSGASKLL ANMLYSYRGM GLSVGTMIAG WDETGPGLYY VDNEGGRLKG DRFSVGSGSP YAYGVLDSGY
201: KYDMSVEEAS ELARRSIYHA TFRDGASGGV ASVYHVGPEG WTKLSGDDVG ELHYHYYPVA PATAEQVMEE ATAE

Arabidopsis Description

PBE120S proteasome beta subunit E1 [Source:UniProtKB/TrEMBL;Acc:F4HP14]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.