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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 2
  • plasma membrane 2
  • golgi 2
  • plastid 1
  • mitochondrion 4
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, mitochondrion, plastid, secretory
BaCelLo:secretory
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
Predotar:secretory
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:cytosol
YLoc:mitochondrion
extracellular: 28052459
msms PMID: 28052459 doi
A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr
Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT3G27430.2 Thale cress cytosol 80.79 97.07
CDY34146 Canola cytosol 77.13 92.67
KRH14247 Soybean cytosol 66.46 80.44
KRH73888 Soybean cytosol, nucleus 66.46 80.44
CDX83694 Canola golgi 80.18 79.46
VIT_01s0137g00420.t01 Wine grape cytosol 65.55 78.75
Solyc05g013820.2.1 Tomato nucleus 59.76 78.71
GSMUA_Achr9P20290_001 Banana cytosol 64.33 77.29
Zm00001d019262_P001 Maize cytosol 64.33 77.29
Os05t0187000-01 Rice plastid 63.72 76.84
GSMUA_Achr7P03760_001 Banana cytosol 64.02 76.64
Solyc04g024420.2.1 Tomato cytosol, extracellular 63.72 76.56
EER98255 Sorghum cytosol 63.72 76.56
KXG19118 Sorghum cytosol 63.41 76.19
TraesCS1D01G123600.1 Wheat cytosol, golgi, unclear 62.5 75.37
TraesCS1A01G122700.1 Wheat cytosol 62.5 75.37
TraesCS1B01G141900.1 Wheat cytosol 62.2 75.0
PGSC0003DMT400034355 Potato cytosol, mitochondrion 39.33 73.3
HORVU1Hr1G028190.1 Barley plastid 63.41 65.62
PGSC0003DMT400043694 Potato cytosol 64.94 64.55
OQU86162 Sorghum plastid 28.35 58.86
Zm00001d035915_P001 Maize extracellular 64.63 49.42
CDY13711 Canola cytosol 77.13 48.19
CDY36450 Canola cytosol 20.12 28.33
CDY28254 Canola cytosol 19.51 27.47
CDY23291 Canola cytosol 19.51 27.47
CDY13421 Canola cytosol 19.51 27.47
CDX68732 Canola cytosol 19.51 27.47
CDX72300 Canola cytosol 19.21 27.04
CDX83281 Canola extracellular 10.98 26.87
CDY34594 Canola cytosol 19.51 23.36
CDY26610 Canola cytosol 19.51 23.36
CDY21081 Canola extracellular 19.51 23.36
CDY19402 Canola cytosol 19.51 23.36
CDY16054 Canola extracellular 19.51 23.36
CDX98014 Canola extracellular 19.51 23.36
CDY70092 Canola cytosol 5.18 20.48
Protein Annotations
MapMan:19.2.6.1.2.2Gene3D:3.60.20.10GO:A0A078ETP2EnsemblPlants:CDY03969ProteinID:CDY03969ProteinID:CDY03969.1
GO:GO:0003674GO:GO:0003824GO:GO:0004175GO:GO:0004298GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005839GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009987
GO:GO:0016787GO:GO:0019538GO:GO:0051603EnsemblPlantsGene:GSBRNA2T00117490001InterPro:IPR023333InterPro:IPR029055
InterPro:Ntn_hydrolases_NPFAM:PF00227PRINTS:PR00141ScanProsite:PS00854PFscan:PS51476PANTHER:PTHR11599
PANTHER:PTHR11599:SF67InterPro:Pept_T1A_subBInterPro:Proteasome_bsu_CSInterPro:Proteasome_suB-typeInterPro:Proteasome_sua/bSUPFAM:SSF56235
UniParc:UPI0004EE35FF:::::
Description
BnaC02g36840D
Coordinates
chrLK031948:+:20058..22337
Molecular Weight (calculated)
36196.7 Da
IEP (calculated)
8.542
GRAVY (calculated)
-0.131
Length
328 amino acids
Sequence
(BLAST)
001: MDLLKVNWGR RKHSLFYYLF LASKQLFPLD LYLFSPNPFR FDQPSSSSRL FDFGRMSQAG VDVPAKGGFS FDLCKRNDML IQKGLKAPSF LKTGTTIVGL
101: IFKDGVILGA DTRATEGPIV ADKNCEKIHY MAPNIYCCGA GTAADTEAVT DMVSSQLRLH RYQTGRDSRV ITALTLLKKH LFSYQGHVSA ALVLGGVDIT
201: GPHLHTIYPH GSTDTLPFAT MGSGSLAAMS VFEAKYKEGL TRDEGIKLVA EAICSGIFND LGSGSNVDIC VITKGHKEYL RNYMEPNPRT YVSSKGYSFT
301: KKTEVLRTKI TPLMERVEIT EVGEAMEE
Best Arabidopsis Sequence Match ( AT3G27430.2 )
(BLAST)
001: MSQSTVDVPP KGGFSFDLCK RNDMLTQKGL KAPSFLKTGT TIVGLIFKDG VILGADTRAT EGPIVADKNC EKIHYMAPNI YCCGAGTAAD TEAVTDMVSS
101: QLRLHRYQTG RDSRVITALT LLKKHLFSYQ GHVSAALVLG GVDITGPHLH TIYPHGSTDT LPFATMGSGS LAAMSVFEAK YKEGLTRDEG IKLVAESICS
201: GIFNDLGSGS NVDICVITKG NKEYLRNYME PNPRTYVSSK GYSFTKKTEV LLTKITPLLE RVEITEVGEA MEE
Arabidopsis Description
PBB1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178VCF7]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.