Factsheet for Zm00001d035915_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 3
endoplasmic reticulum 4
vacuole 4
plasma membrane 3
golgi 3
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	vacuole

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d019262_P001	Maize	cytosol	61.07	95.97
KXG19118	Sorghum	cytosol	60.61	95.24
TraesCS1D01G123600.1	Wheat	cytosol, golgi, unclear	57.11	90.07
TraesCS1A01G122700.1	Wheat	cytosol	56.88	89.71
TraesCS1B01G141900.1	Wheat	cytosol	56.64	89.34
Os05t0187000-01	Rice	plastid	56.64	89.34
VIT_01s0137g00420.t01	Wine grape	cytosol	53.15	83.52
GSMUA_Achr9P20290_001	Banana	cytosol	52.45	82.42
KRH14247	Soybean	cytosol	51.75	81.92
KRH73888	Soybean	cytosol, nucleus	51.75	81.92
GSMUA_Achr7P03760_001	Banana	cytosol	51.28	80.29
HORVU1Hr1G028190.1	Barley	plastid	57.58	77.92
AT5G40580.1	Thale cress	cytosol	49.65	77.74
PGSC0003DMT400034355	Potato	cytosol, mitochondrion	31.47	76.7
Solyc04g024420.2.1	Tomato	cytosol, extracellular	48.48	76.19
AT3G27430.2	Thale cress	cytosol	48.25	75.82
CDY34146	Canola	cytosol	47.79	75.09
Bra033011.1-P	Field mustard	cytosol	47.79	75.09
Solyc05g013820.2.1	Tomato	nucleus	42.66	73.49
CDY03969	Canola	extracellular	49.42	64.63
CDX83694	Canola	golgi	49.65	64.35
PGSC0003DMT400043694	Potato	cytosol	46.39	60.3
CDY13711	Canola	cytosol	53.61	43.81
Bra025276.1-P	Field mustard	cytosol	53.15	41.38
Zm00001d036108_P001	Maize	cytosol	15.38	26.61
Zm00001d045403_P001	Maize	cytosol	14.92	25.91
Zm00001d045315_P003	Maize	cytosol	13.99	20.76

Protein Annotations

MapMan:19.2.6.1.2.2	Gene3D:3.60.20.10	UniProt:A0A1D6LJL1	ProteinID:AQK79931.1	GO:GO:0000502	GO:GO:0003674
GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005839	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	InterPro:IPR023333	InterPro:IPR029055	InterPro:Ntn_hydrolases_N
PFAM:PF00227	PRINTS:PR00141	ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF67
InterPro:Pept_T1A_subB	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	SignalP:SignalP-noTM
UniParc:UPI000842EB91	EnsemblPlantsGene:Zm00001d035915	EnsemblPlants:Zm00001d035915_P001	EnsemblPlants:Zm00001d035915_T001	SEG:seg	:

Description

Proteasome subunit beta type

Coordinates

chr6:+:60128223..60132490

Molecular Weight (calculated)

46160.6 Da

IEP (calculated)

9.398

GRAVY (calculated)

-0.208

Length

429 amino acids

Sequence
(BLAST)

001: MNKSSIFFCL CCSILIGLHV KAHRHPPNIR RNESPAPEKK NIRGRFFLLA QSNSKLSIQW EKKNKKGTGS GESLAPRRSR IVSGAHVRSG APRPPRLSCD
101: DHPSNRYHSP LPLLSLPAAP WNPLSDLDLD LTSLLPVAIR LAVTLIRGGG SAGAGRMTGS MDLPAKGGFS FDLCRRNNML EKNGLKVPGF RKTGTTIVGL
201: VFQDGVVLGA DTRATEGPIV ADKNCEKIHF MAPNIYCCGA GTAADTEAVT DMVSSQLQLH RYATGRESRV VTALTLLKSH LFKYQGHVSA ALVLGGVDCT
301: GPHLHTVYPH GSTDTLPFAT MGSGSLAAMS VFESKYKEGL TREEGIQIVC EAICAGIFND LGSGSNVDVC VITKGKTEYL RNHQLPNPRT YASSKGYSFT
401: KGQTEVLSSK VTLLKQKVEV AEGGDAMEE

Best Arabidopsis Sequence Match ( AT3G27430.2 )
(BLAST)

001: MSQSTVDVPP KGGFSFDLCK RNDMLTQKGL KAPSFLKTGT TIVGLIFKDG VILGADTRAT EGPIVADKNC EKIHYMAPNI YCCGAGTAAD TEAVTDMVSS
101: QLRLHRYQTG RDSRVITALT LLKKHLFSYQ GHVSAALVLG GVDITGPHLH TIYPHGSTDT LPFATMGSGS LAAMSVFEAK YKEGLTRDEG IKLVAESICS
201: GIFNDLGSGS NVDICVITKG NKEYLRNYME PNPRTYVSSK GYSFTKKTEV LLTKITPLLE RVEITEVGEA MEE

Arabidopsis Description

PBB1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178VCF7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.