CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033011.1-P	Field mustard	cytosol	100.0	100.0
AT3G27430.2	Thale cress	cytosol	91.58	91.58
KRH73888	Soybean	cytosol, nucleus	78.75	79.34
KRH14247	Soybean	cytosol	78.75	79.34
Solyc05g013820.2.1	Tomato	nucleus	70.7	77.51
VIT_01s0137g00420.t01	Wine grape	cytosol	77.29	77.29
CDY03969	Canola	extracellular	92.67	77.13
Os05t0187000-01	Rice	plastid	76.19	76.47
Zm00001d019262_P001	Maize	cytosol	76.19	76.19
GSMUA_Achr9P20290_001	Banana	cytosol	76.19	76.19
GSMUA_Achr7P03760_001	Banana	cytosol	76.19	75.91
CDX83694	Canola	golgi	91.21	75.23
EER98255	Sorghum	cytosol	75.09	75.09
Solyc04g024420.2.1	Tomato	cytosol, extracellular	75.09	75.09
TraesCS1D01G123600.1	Wheat	cytosol, golgi, unclear	74.36	74.63
TraesCS1B01G141900.1	Wheat	cytosol	74.36	74.63
TraesCS1A01G122700.1	Wheat	cytosol	74.36	74.63
KXG19118	Sorghum	cytosol	74.36	74.36
PGSC0003DMT400034355	Potato	cytosol, mitochondrion	46.52	72.16
PGSC0003DMT400043694	Potato	cytosol	81.69	67.58
HORVU1Hr1G028190.1	Barley	plastid	73.99	63.72
OQU86162	Sorghum	plastid	30.77	53.16
Zm00001d035915_P001	Maize	extracellular	75.09	47.79
CDY13711	Canola	cytosol	90.11	46.86
CDY36450	Canola	cytosol	24.91	29.18
CDY13421	Canola	cytosol	24.18	28.33
CDY23291	Canola	cytosol	24.18	28.33
CDY28254	Canola	cytosol	24.18	28.33
CDX68732	Canola	cytosol	24.18	28.33
CDX72300	Canola	cytosol	23.81	27.9
CDX83281	Canola	extracellular	13.19	26.87
CDY16054	Canola	extracellular	24.54	24.45
CDY19402	Canola	cytosol	24.54	24.45
CDY21081	Canola	extracellular	24.54	24.45
CDX98014	Canola	extracellular	24.54	24.45
CDY34594	Canola	cytosol	24.54	24.45
CDY26610	Canola	cytosol	24.54	24.45
CDY70092	Canola	cytosol	6.59	21.69

Protein Annotations

MapMan:19.2.6.1.2.2	Gene3D:3.60.20.10	GO:A0A078H8M5	UniProt:A0A078H8M5	EnsemblPlants:CDY34146	ProteinID:CDY34146
ProteinID:CDY34146.1	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	EnsemblPlantsGene:GSBRNA2T00056120001	InterPro:IPR023333	InterPro:IPR029055
InterPro:Ntn_hydrolases_N	PFAM:PF00227	PRINTS:PR00141	ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599
PANTHER:PTHR11599:SF67	InterPro:Pept_T1A_subB	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235
UniParc:UPI00025455DC	:	:	:	:	:

Description

BnaA02g28940DProteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A078H8M5]

Coordinates

chrLK032330:-:10302..12767

Molecular Weight (calculated)

29606.7 Da

IEP (calculated)

7.529

GRAVY (calculated)

-0.126

Length

273 amino acids

Sequence
(BLAST)

001: MTQSGVDVPP KGGFSFDLCK RNDMLIQKGL KAPSFLKTGT TIVGLIFKDG VILGADTRAT EGPIVADKNC EKIHYMAPNI YCCGAGTAAD TEAVTDMVSS
101: QLRLHRYQTG RDSRVITALT LLKKHLFSYQ GHVSAALVLG GVDITGPHLH TIYPHGSTDT LPFATMGSGS LAAMSVFEAK YKEGLTRDEG IKLVAEAICS
201: GIFNDLGSGS NVDICVITKG HKEYLRNYME PNPRTYVSSK GYSFTKKTEV LRTKITPLME RVEITEVGEA MEE

Best Arabidopsis Sequence Match ( AT3G27430.2 )
(BLAST)

001: MSQSTVDVPP KGGFSFDLCK RNDMLTQKGL KAPSFLKTGT TIVGLIFKDG VILGADTRAT EGPIVADKNC EKIHYMAPNI YCCGAGTAAD TEAVTDMVSS
101: QLRLHRYQTG RDSRVITALT LLKKHLFSYQ GHVSAALVLG GVDITGPHLH TIYPHGSTDT LPFATMGSGS LAAMSVFEAK YKEGLTRDEG IKLVAESICS
201: GIFNDLGSGS NVDICVITKG NKEYLRNYME PNPRTYVSSK GYSFTKKTEV LLTKITPLLE RVEITEVGEA MEE

Arabidopsis Description

PBB1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178VCF7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.