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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • mitochondrion 2
  • plastid 4
  • endoplasmic reticulum 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:endoplasmic reticulum, mitochondrion, plastid
BaCelLo:mitochondrion
iPSORT:plastid
MultiLoc:endoplasmic reticulum
Predotar:plastid
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:plastid
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EER98255 Sorghum cytosol 59.49 34.43
AT3G27430.2 Thale cress cytosol 58.23 33.7
KXG19118 Sorghum cytosol 58.23 33.7
PGSC0003DMT400034355 Potato cytosol, mitochondrion 36.71 32.95
GSMUA_Achr9P20290_001 Banana cytosol 56.33 32.6
AT5G40580.1 Thale cress cytosol 56.33 32.48
GSMUA_Achr7P03760_001 Banana cytosol 56.33 32.48
KRH73888 Soybean cytosol, nucleus 53.8 31.37
KRH14247 Soybean cytosol 53.8 31.37
VIT_01s0137g00420.t01 Wine grape cytosol 53.8 31.14
CDY34146 Canola cytosol 53.16 30.77
Bra033011.1-P Field mustard cytosol 53.16 30.77
Solyc04g024420.2.1 Tomato cytosol, extracellular 49.37 28.57
Solyc05g013820.2.1 Tomato nucleus 44.94 28.51
CDY03969 Canola extracellular 58.86 28.35
CDX83694 Canola golgi 58.86 28.1
PGSC0003DMT400043694 Potato cytosol 45.57 21.82
CDY13711 Canola cytosol 56.96 17.14
Bra025276.1-P Field mustard cytosol 56.96 16.33
EER89220 Sorghum cytosol 17.09 9.64
EES14124 Sorghum cytosol 11.39 7.35
EER89160 Sorghum cytosol 10.76 6.94
Protein Annotations
EnsemblPlants:OQU86162EnsemblPlantsGene:SORBI_3003G035601PANTHER:PTHR11599PANTHER:PTHR11599:SF67ProteinID:OQU86162ProteinID:OQU86162.1
UniParc:UPI0009DC89FCUniProt:A0A1W0VVK5MapMan:35.1:::
Description
hypothetical protein
Coordinates
chr3:-:3261400..3263498
Molecular Weight (calculated)
17058.8 Da
IEP (calculated)
8.801
GRAVY (calculated)
0.066
Length
158 amino acids
Sequence
(BLAST)
001: MVASMGVGSA SICHLCARNG MLEKTGLKIP VFRKTGTTIV GLVFSVSILI SHPKILAYIE YQGHVSTALV LGGVDCTGPH LHYTQSLAAM SVFEAKYKEG
101: LTGKTEYLRN HLLPNPRTYV SSRGYSFAQE GRTEVLSTKI TPLRPNAEVT AVGDAMEE
Best Arabidopsis Sequence Match ( AT3G27430.3 )
(BLAST)
001: MSQSTVDVPP KGGFSFDLCK RNDMLTQKGL KAPSFLKTGT TIDGVILGAD TRATEGPIVA DKNCEKIHYM APNIYCCGAG TAADTEAVTD MVSSQLRLHR
101: YQTGRDSRVI TALTLLKKHL FSYQGHVSAA LVLGGVDITG PHLHTIYPHG STDTLPFATM GSGSLAAMSV FEAKYKEGLT RDEGIKLVAE SICSGIFNDL
201: GSGSNVDICV ITKGNKEYLR NYMEPNPRTY VSSKGYSFTK KTEVLLTKIT PLLERVEITE VGEAMEE
Arabidopsis Description
PBB1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178VCF7]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.