CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d019262_P001	Maize	cytosol	97.44	97.44
KXG19118	Sorghum	cytosol	96.7	96.7
TraesCS1D01G123600.1	Wheat	cytosol, golgi, unclear	90.11	90.44
TraesCS1A01G122700.1	Wheat	cytosol	89.74	90.07
Os05t0187000-01	Rice	plastid	89.74	90.07
TraesCS1B01G141900.1	Wheat	cytosol	89.38	89.71
VIT_01s0137g00420.t01	Wine grape	cytosol	84.25	84.25
GSMUA_Achr9P20290_001	Banana	cytosol	84.25	84.25
KRH14247	Soybean	cytosol	82.42	83.03
KRH73888	Soybean	cytosol, nucleus	82.42	83.03
GSMUA_Achr7P03760_001	Banana	cytosol	82.42	82.12
AT5G40580.1	Thale cress	cytosol	78.75	78.47
PGSC0003DMT400034355	Potato	cytosol, mitochondrion	50.55	78.41
Solyc04g024420.2.1	Tomato	cytosol, extracellular	77.29	77.29
HORVU1Hr1G028190.1	Barley	plastid	89.01	76.66
AT3G27430.2	Thale cress	cytosol	75.82	75.82
Solyc05g013820.2.1	Tomato	nucleus	68.86	75.5
CDY34146	Canola	cytosol	75.09	75.09
Bra033011.1-P	Field mustard	cytosol	75.09	75.09
CDX83694	Canola	golgi	78.02	64.35
CDY03969	Canola	extracellular	76.56	63.72
PGSC0003DMT400043694	Potato	cytosol	72.89	60.3
OQU86162	Sorghum	plastid	34.43	59.49
CDY13711	Canola	cytosol	80.59	41.9
Bra025276.1-P	Field mustard	cytosol	79.49	39.38
EER89160	Sorghum	cytosol	23.08	25.71
EES14124	Sorghum	cytosol	23.08	25.71
EER89220	Sorghum	cytosol	22.34	21.79

Protein Annotations

MapMan:19.2.6.1.2.2	Gene3D:3.60.20.10	EntrezGene:8069144	UniProt:C5X1Y0	EnsemblPlants:EER98255	ProteinID:EER98255
ProteinID:EER98255.1	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	InterPro:IPR023333	InterPro:IPR029055	InterPro:Ntn_hydrolases_N
PFAM:PF00227	PRINTS:PR00141	ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF67
InterPro:Pept_T1A_subB	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	EnsemblPlantsGene:SORBI_3002G087000	SUPFAM:SSF56235
unigene:Sbi.13513	UniParc:UPI0001A83DD1	RefSeq:XP_002461734.1	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:9209775..9214429

Molecular Weight (calculated)

29221.9 Da

IEP (calculated)

7.189

GRAVY (calculated)

-0.170

Length

273 amino acids

Sequence
(BLAST)

001: MTGSMDLPAK GGFSFDLCRR NNMLEKNGLK LPGFRKTGTT IVGLVFQDGV VLGADTRATE GPIVADKNCE KIHFMAPNIY CCGAGTAADT EAVTDMVSSQ
101: LQLHRYATGR ESRVVTALTL LKSHLFRYQG HVSAALVLGG VDCTGPHLHT VYPHGSTDTL PFATMGSGSL AAMSVFESKY KEGLTREEGI QLVSDAICAG
201: IFNDLGSGSN VDVCVITKGK TEYLRNHQLP NPRTYASSKG YSFSKGQTEV LSTKITPLKQ KVEVTEGGDA MEE

Best Arabidopsis Sequence Match ( AT3G27430.2 )
(BLAST)

001: MSQSTVDVPP KGGFSFDLCK RNDMLTQKGL KAPSFLKTGT TIVGLIFKDG VILGADTRAT EGPIVADKNC EKIHYMAPNI YCCGAGTAAD TEAVTDMVSS
101: QLRLHRYQTG RDSRVITALT LLKKHLFSYQ GHVSAALVLG GVDITGPHLH TIYPHGSTDT LPFATMGSGS LAAMSVFEAK YKEGLTRDEG IKLVAESICS
201: GIFNDLGSGS NVDICVITKG NKEYLRNYME PNPRTYVSSK GYSFTKKTEV LLTKITPLLE RVEITEVGEA MEE

Arabidopsis Description

PBB1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178VCF7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.