CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 1
golgi 4
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
MultiLoc:	golgi
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G27430.2	Thale cress	cytosol	78.25	94.87
CDY34146	Canola	cytosol	75.23	91.21
KRH14247	Soybean	cytosol	66.77	81.55
KRH73888	Soybean	cytosol, nucleus	66.77	81.55
CDY03969	Canola	extracellular	79.46	80.18
VIT_01s0137g00420.t01	Wine grape	cytosol	65.86	79.85
Os05t0187000-01	Rice	plastid	64.65	78.68
GSMUA_Achr9P20290_001	Banana	cytosol	64.65	78.39
Zm00001d019262_P001	Maize	cytosol	64.65	78.39
GSMUA_Achr7P03760_001	Banana	cytosol	64.65	78.1
EER98255	Sorghum	cytosol	64.35	78.02
Solyc04g024420.2.1	Tomato	cytosol, extracellular	64.05	77.66
Solyc05g013820.2.1	Tomato	nucleus	58.31	77.51
KXG19118	Sorghum	cytosol	63.75	77.29
TraesCS1D01G123600.1	Wheat	cytosol, golgi, unclear	63.44	77.21
TraesCS1A01G122700.1	Wheat	cytosol	63.44	77.21
TraesCS1B01G141900.1	Wheat	cytosol	63.14	76.84
PGSC0003DMT400034355	Potato	cytosol, mitochondrion	40.18	75.57
HORVU1Hr1G028190.1	Barley	plastid	63.44	66.25
PGSC0003DMT400043694	Potato	cytosol	63.44	63.64
OQU86162	Sorghum	plastid	28.1	58.86
CDY13711	Canola	cytosol	83.38	52.57
Zm00001d035915_P001	Maize	extracellular	64.35	49.65
Bra025276.1-P	Field mustard	cytosol	82.48	49.55
CDY36450	Canola	cytosol	20.24	28.76
CDY28254	Canola	cytosol	19.64	27.9
CDY23291	Canola	cytosol	19.64	27.9
CDY13421	Canola	cytosol	19.64	27.9
CDX68732	Canola	cytosol	19.64	27.9
CDX72300	Canola	cytosol	19.34	27.47
CDX83281	Canola	extracellular	10.88	26.87
CDY34594	Canola	cytosol	19.64	23.72
CDY26610	Canola	cytosol	19.64	23.72
CDY21081	Canola	extracellular	19.64	23.72
CDY19402	Canola	cytosol	19.64	23.72
CDY16054	Canola	extracellular	19.64	23.72
CDX98014	Canola	extracellular	19.64	23.72
CDY70092	Canola	cytosol	5.44	21.69

Protein Annotations

MapMan:19.2.6.1.2.2	Gene3D:3.60.20.10	GO:A0A078D5T6	EnsemblPlants:CDX83694	ProteinID:CDX83694	ProteinID:CDX83694.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005839	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	EnsemblPlantsGene:GSBRNA2T00139399001	InterPro:IPR023333	InterPro:IPR029055
InterPro:Ntn_hydrolases_N	PFAM:PF00227	PRINTS:PR00141	ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599
PANTHER:PTHR11599:SF67	InterPro:Pept_T1A_subB	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235
UniParc:UPI0004EDB177	SEG:seg	:	:	:	:

Description

BnaC07g24340D

Coordinates

chrLK031833:+:1633530..1638661

Molecular Weight (calculated)

36479.2 Da

IEP (calculated)

8.270

GRAVY (calculated)

-0.049

Length

331 amino acids

Sequence
(BLAST)

001: MFDVTKIIKM LVYNLIGEEE NSVIVFLFFA FFSFSRRLLF SDSSRVRVHS RPGQFCRMSQ STVDVPPKGG FSFDLCKRND MLIQKGLKAP SFLKTGTTIV
101: GLIFKDGVIL GADTRATEGP IVADKNCEKI HYMAPNIYCC GAGTAADTEA VTDMVSSQLR LHRYQTGRDS RVITALTLLK KHLFSYQGHV SAALVLGGVD
201: ITGPHLHTIY PHGSTDTLPF ATMGSGSLAA MSVFEAKYKE GLTRDEGIKL VAEAICSGIF NDLGSGSNVD ICVITKGNKE YLRNYMEPNP RTYVSSKGYS
301: FTKKTEVLRT KITPLMERVE ITEVTGEAME E

Best Arabidopsis Sequence Match ( AT3G27430.2 )
(BLAST)

001: MSQSTVDVPP KGGFSFDLCK RNDMLTQKGL KAPSFLKTGT TIVGLIFKDG VILGADTRAT EGPIVADKNC EKIHYMAPNI YCCGAGTAAD TEAVTDMVSS
101: QLRLHRYQTG RDSRVITALT LLKKHLFSYQ GHVSAALVLG GVDITGPHLH TIYPHGSTDT LPFATMGSGS LAAMSVFEAK YKEGLTRDEG IKLVAESICS
201: GIFNDLGSGS NVDICVITKG NKEYLRNYME PNPRTYVSSK GYSFTKKTEV LLTKITPLLE RVEITEVGEA MEE

Arabidopsis Description

PBB1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178VCF7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.