Factsheet for Solyc05g056160.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 3
plastid 1
nucleus 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

extracellular: 22364583
plastid: 26371478
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc05g006030.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26340.1	Solyc05g006030.2.1	AT1G10530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400059981	Potato	cytosol	99.27	99.63
VIT_01s0010g02900.t01	Wine grape	cytosol	86.08	86.4
KRH54198	Soybean	nucleus	84.62	84.93
GSMUA_Achr9P07850_001	Banana	cytosol	83.88	83.88
KRH63751	Soybean	cytosol	82.05	82.35
CDX98014	Canola	extracellular	82.42	82.12
CDY16054	Canola	extracellular	82.05	81.75
CDY19402	Canola	cytosol	82.05	81.75
CDY21081	Canola	extracellular	82.05	81.75
CDY34594	Canola	cytosol	82.05	81.75
CDY26610	Canola	cytosol	81.69	81.39
Bra019807.1-P	Field mustard	cytosol	81.69	81.39
AT3G26340.1	Thale cress	cytosol	81.32	81.32
Bra026938.1-P	Field mustard	cytosol	65.57	78.17
Solyc03g063420.1.1	Tomato	mitochondrion	52.38	74.87
AT1G13060.3	Thale cress	cytosol	80.95	74.16
Solyc03g063450.1.1	Tomato	cytosol	30.77	38.71
Solyc07g016200.2.1	Tomato	extracellular, plastid	24.91	28.81
Solyc05g013820.2.1	Tomato	nucleus	21.98	24.1
Solyc04g024420.2.1	Tomato	cytosol, extracellular	20.88	20.88

Protein Annotations

MapMan:19.2.6.1.2.5	Gene3D:3.60.20.10	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175
GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005839	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	InterPro:IPR023333	InterPro:IPR029055
UniProt:K4C2U0	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PRINTS:PR00141	ScanProsite:PS00854	PFscan:PS51476
PANTHER:PTHR11599	PANTHER:PTHR11599:SF63	InterPro:Pept_T1A_subB	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b
SUPFAM:SSF56235	EnsemblPlantsGene:Solyc05g056160.2	EnsemblPlants:Solyc05g056160.2.1	MEROPS:T01.A10	UniParc:UPI00027656F9	SEG:seg

Description

Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:K4C2U0]

Coordinates

chr5:-:65551647..65555962

Molecular Weight (calculated)

29473.1 Da

IEP (calculated)

7.210

GRAVY (calculated)

-0.181

Length

273 amino acids

Sequence
(BLAST)

001: MMKIDFSGLE PSAPLRGESS ELFDGISNSP SFHLPNTANF DGFQKEAIQM VKPAKGTTTL AFIFKGGVMV AADSRASMGG YISSQSVKKI IEINPYMLGT
101: MAGGAADCQF WHRNLGIKCR LHELANKRRI SVTGASKLLA NILYSYRGMG LSVGTMIAGW DEKGPGLYYV DSEGGRLKGN RFSVGSGSPY AYGVLDNGYR
201: YDLSVEEAAE LARRAIYHAT FRDGASGGVA SVYHVGPNGW KKLSGDDVGE LHYHYYPVEV AAVEQEMAEV PVA

Best Arabidopsis Sequence Match ( AT3G26340.1 )
(BLAST)

001: MKLDTSGLET TMPVIGFGSN SEMLDGFSSA PSFDLPRTTD FDGFQKKAVE MVKPAKGTTT LAFIFKEGVM VAADSRASMG GYISSQSVKK IIEINPYMLG
101: TMAGGAADCQ FWHRNLGIKC RLHELANKRR ISVSGASKLL ANMLYSYRGM GLSVGTMIAG WDETGPGLYY VDNEGGRLKG DRFSVGSGSP YAYGVLDSGY
201: KFDMSVEEAS ELARRSIYHA TFRDGASGGV ASVYHVGPQG WTKLSGDDVG ELHYHYYPVA PITAEHVMEE AAE

Arabidopsis Description

PBE2Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178VFG8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.