Factsheet for Bra026938.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 1
nucleus 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra031717.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26340.1	Bra031717.1-P	AT1G10530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16054	Canola	extracellular	98.69	82.48
CDY26610	Canola	cytosol	98.25	82.12
Bra019807.1-P	Field mustard	cytosol	97.38	81.39
AT3G26340.1	Thale cress	cytosol	87.77	73.63
AT1G13060.3	Thale cress	cytosol	90.83	69.8
VIT_01s0010g02900.t01	Wine grape	cytosol	80.35	67.65
Solyc05g056160.2.1	Tomato	extracellular	78.17	65.57
PGSC0003DMT400059981	Potato	cytosol	77.73	65.44
Bra022650.1-P	Field mustard	cytosol	31.0	65.14
KRH54198	Soybean	nucleus	75.55	63.6
KRH63751	Soybean	cytosol	74.67	62.87
GSMUA_Achr6P28520_001	Banana	extracellular	13.1	31.91
Bra024015.1-P	Field mustard	cytosol	22.27	21.89
Bra011257.1-P	Field mustard	cytosol	21.4	21.03
Bra010243.1-P	Field mustard	cytosol	20.96	20.6
Bra033011.1-P	Field mustard	cytosol	20.96	17.58
Bra025276.1-P	Field mustard	cytosol	20.09	8.35

Protein Annotations

MapMan:19.2.6.1.2.5	Gene3D:3.60.20.10	EnsemblPlantsGene:Bra026938	EnsemblPlants:Bra026938.1	EnsemblPlants:Bra026938.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005839
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
GO:GO:0051603	InterPro:IPR029055	UniProt:M4EDS8	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PANTHER:PTHR11599
PANTHER:PTHR11599:SF63	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	UniParc:UPI0002542F79	:	:

Description

AT1G13060 (E=3e-058) PBE1 | PBE1; endopeptidase/ peptidase/ threonine-type endopeptidase

Coordinates

chrA09:-:34402591..34404415

Molecular Weight (calculated)

24553.9 Da

IEP (calculated)

4.761

GRAVY (calculated)

-0.192

Length

229 amino acids

Sequence
(BLAST)

001: MKLDTSGFET SMPTIGFGSS NDMLDGFSTV PSFDLPRTTD FDGFQKEAVQ MVKPAKGTTT LAFIFIEGAM VAAASRASMG GYISSQSVKK IIEINPYMLG
101: TMAGGAADCQ FWHRNLGIKG PGLYYVDNEG GRLKGDRFSV GSGSPYAYGV LDSGYKFDMS VEEASELARR SIYHATFRDG ASGGVASVYH VGPNGWTKLS
201: GDDVGELHYH YYPVPPAIAE QVMEEAAAE

Best Arabidopsis Sequence Match ( AT3G26340.1 )
(BLAST)

001: MKLDTSGLET TMPVIGFGSN SEMLDGFSSA PSFDLPRTTD FDGFQKKAVE MVKPAKGTTT LAFIFKEGVM VAADSRASMG GYISSQSVKK IIEINPYMLG
101: TMAGGAADCQ FWHRNLGIKC RLHELANKRR ISVSGASKLL ANMLYSYRGM GLSVGTMIAG WDETGPGLYY VDNEGGRLKG DRFSVGSGSP YAYGVLDSGY
201: KFDMSVEEAS ELARRSIYHA TFRDGASGGV ASVYHVGPQG WTKLSGDDVG ELHYHYYPVA PITAEHVMEE AAE

Arabidopsis Description

PBE2Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178VFG8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.