Factsheet for Bra019807.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 1
nucleus 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra031717.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26340.1	Bra031717.1-P	AT1G10530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19402	Canola	cytosol	98.91	98.91
CDX98014	Canola	extracellular	98.91	98.91
CDY34594	Canola	cytosol	98.54	98.54
CDY21081	Canola	extracellular	98.54	98.54
Bra026938.1-P	Field mustard	cytosol	81.39	97.38
AT3G26340.1	Thale cress	cytosol	89.78	90.11
AT1G13060.3	Thale cress	cytosol	92.34	84.9
VIT_01s0010g02900.t01	Wine grape	cytosol	83.58	84.19
Solyc05g056160.2.1	Tomato	extracellular	81.39	81.69
PGSC0003DMT400059981	Potato	cytosol	81.02	81.62
KRH54198	Soybean	nucleus	79.56	80.15
KRH63751	Soybean	cytosol	78.83	79.41
Bra022650.1-P	Field mustard	cytosol	25.91	65.14
GSMUA_Achr6P28520_001	Banana	extracellular	17.15	50.0
Bra024015.1-P	Field mustard	cytosol	22.99	27.04
Bra011257.1-P	Field mustard	cytosol	22.26	26.18
Bra010243.1-P	Field mustard	cytosol	21.9	25.75
Bra033011.1-P	Field mustard	cytosol	24.45	24.54
Bra025276.1-P	Field mustard	cytosol	23.72	11.8

Protein Annotations

MapMan:19.2.6.1.2.5	Gene3D:3.60.20.10	EnsemblPlantsGene:Bra019807	EnsemblPlants:Bra019807.1	EnsemblPlants:Bra019807.1-P	GO:GO:0000502
GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0008150
GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
GO:GO:0051603	InterPro:IPR023333	InterPro:IPR029055	UniProt:M4DTG4	InterPro:Ntn_hydrolases_N	PFAM:PF00227
PRINTS:PR00141	ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF63	InterPro:Pept_T1A_subB
InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	UniParc:UPI000253EC60	:

Description

AT3G26340 (E=2e-148) | 20S proteasome beta subunit E, putative

Coordinates

chrA06:-:4303876..4305680

Molecular Weight (calculated)

29588.1 Da

IEP (calculated)

5.958

GRAVY (calculated)

-0.216

Length

274 amino acids

Sequence
(BLAST)

001: MKLDTSGFET SMPTIGFGSS NDMLDGFSTV PSFDLPRTTD FDGFQKEAVQ MVKPAKGTTT LAFIFKEGVM VAADSRASMG GYISSQSVKK IIEINPYMLG
101: TMAGGAADCQ FWHRNLGIKC RLHELANKRR ISVSGASKLL ANMLYSYRGM GLSVGTMIAG WDETGPGLYY VDNEGGRLKG DRLSVGSGSP YAYGVLDSGY
201: KFDMTVEEAS ELARRSIYHA TFRDGASGGV ASVYHVGPNG WKKLSGDDVG ELHYHYYPVP PAIAEQVMEE AAAE

Best Arabidopsis Sequence Match ( AT3G26340.1 )
(BLAST)

001: MKLDTSGLET TMPVIGFGSN SEMLDGFSSA PSFDLPRTTD FDGFQKKAVE MVKPAKGTTT LAFIFKEGVM VAADSRASMG GYISSQSVKK IIEINPYMLG
101: TMAGGAADCQ FWHRNLGIKC RLHELANKRR ISVSGASKLL ANMLYSYRGM GLSVGTMIAG WDETGPGLYY VDNEGGRLKG DRFSVGSGSP YAYGVLDSGY
201: KFDMSVEEAS ELARRSIYHA TFRDGASGGV ASVYHVGPQG WTKLSGDDVG ELHYHYYPVA PITAEHVMEE AAE

Arabidopsis Description

PBE2Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178VFG8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.