CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER96942
EES14314
OQU81760

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G60010.1	EER96942	AT4G26455.1	21798944
AT1G60010.1	EES14314	AT4G26455.1	21798944
AT1G60010.1	OQU81760	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G098100.1	Wheat	cytosol	62.07	65.06
TraesCS7A01G192700.1	Wheat	cytosol	62.07	64.67
TraesCS7D01G194000.1	Wheat	cytosol	59.77	64.2
Zm00001d044783_P001	Maize	cytosol	62.64	62.64
Os06t0236300-01	Rice	cytosol	61.49	56.61
KXG30786	Sorghum	cytosol	53.45	55.36
HORVU7Hr1G039360.7	Barley	cytosol	52.3	52.3
GSMUA_Achr5P23980_001	Banana	cytosol	40.8	51.82
HORVU7Hr1G039390.1	Barley	cytosol	48.28	50.6
GSMUA_Achr9P28200_001	Banana	cytosol	46.55	48.5
GSMUA_Achr9P18270_001	Banana	cytosol	49.43	47.25
GSMUA_Achr3P06040_001	Banana	cytosol	46.55	46.02
GSMUA_Achr3P10380_001	Banana	cytosol, nucleus, plastid	48.28	45.41
EER96686	Sorghum	cytosol	46.55	45.25
OQU80443	Sorghum	cytosol	47.7	44.86
PGSC0003DMT400040233	Potato	mitochondrion	38.51	40.61
VIT_01s0026g00730.t01	Wine grape	cytosol	40.8	40.57
KRH74672	Soybean	cytosol	39.66	40.12
Solyc05g006030.2.1	Tomato	cytosol	37.93	39.76
KRG99257	Soybean	cytosol	39.66	39.66
KRH03351	Soybean	cytosol	41.38	39.56
KRH69484	Soybean	cytosol	39.08	39.53
CDY21433	Canola	cytosol	35.63	39.49
AT1G60010.1	Thale cress	cytosol	39.08	39.31
KRH45741	Soybean	cytosol	39.66	39.2
VIT_17s0000g07840.t01	Wine grape	cytosol	41.38	39.13
AT5G50090.1	Thale cress	cytosol	35.63	38.99
Bra000609.1-P	Field mustard	cytosol	35.06	38.85
CDY00334	Canola	nucleus	35.63	38.75
CDX84364	Canola	cytosol	35.63	38.75
Bra010130.1-P	Field mustard	nucleus	35.63	38.75
AT1G10530.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	36.78	38.55
PGSC0003DMT400083024	Potato	cytosol	35.63	38.51
AT5G62900.1	Thale cress	cytosol	35.63	38.51
KRH57030	Soybean	cytosol	39.66	38.33
KRH63480	Soybean	cytosol	37.93	38.15
PGSC0003DMT400063216	Potato	cytosol	40.8	37.97
Solyc03g114020.2.1	Tomato	cytosol	40.8	37.97
CDY24507	Canola	cytosol	37.93	37.71
Bra035410.1-P	Field mustard	cytosol	37.93	37.71
Solyc06g071320.2.1	Tomato	cytosol	33.33	37.42
CDY07805	Canola	nucleus	35.63	37.35
Bra027820.1-P	Field mustard	cytosol	37.93	37.29
CDY30923	Canola	cytosol	37.93	37.29
CDY69854	Canola	cytosol	37.36	36.93
CDY70563	Canola	cytosol	37.93	36.87
Bra031717.1-P	Field mustard	cytosol	35.06	36.75
KRH54436	Soybean	cytosol	37.93	36.46
CDY34887	Canola	cytosol	34.48	36.14
Bra035874.1-P	Field mustard	cytosol	33.91	35.33
CDX87268	Canola	cytosol	30.46	33.12
KXG39943	Sorghum	cytosol	38.51	30.04

Protein Annotations

EnsemblPlants:KXG19676	EnsemblPlantsGene:SORBI_3010G097200	InterPro:DUF4228_plant	PANTHER:PTHR33413	PANTHER:PTHR33413:SF6	PFAM:PF14009
ProteinID:KXG19676	ProteinID:KXG19676.1	SEG:seg	UniParc:UPI0007F1E1D9	UniProt:A0A194YJ94	MapMan:35.2

Description

hypothetical protein

Coordinates

chr10:+:8750293..8752410

Molecular Weight (calculated)

18961.3 Da

IEP (calculated)

10.756

GRAVY (calculated)

-0.710

Length

174 amino acids

Sequence
(BLAST)

001: MGNCQAAEAA TVVVQHPGGR VQRLYWATSA AEVMRANPGH YVALVTHRAD AEKLSQGEQH RHGARVTRVK LLKPRDTLVL GQAYRLITVA EVTKALQAKK
101: EEKTRRAQQL QVVQPKHAGG RTGSGDNSLP QQVADDSLDQ EKDGQRSSSS SAAHSGARHR HWRPSLHSIA EVSS

Best Arabidopsis Sequence Match ( AT1G60010.1 )
(BLAST)

001: MGNCQAVDAA ALVLQHPDGK IDRYYGPVSV SEIMRMYPGH YVSLIIPLPE KNIPATTTTT DDKSERKVVR FTRVKLLRPT ENLVLGHAYR LITSQEVMKV
101: LRAKKYAKTK KHQSETSKEK KKPSSEKKID EESDKNQNLE TKDEKQRSVL TNSASSRSKT WRPSLQSISE ATS

Arabidopsis Description

D-ribose-binding periplasmic protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUJ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.