Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra031717.1-P | Field mustard | cytosol | 78.31 | 78.31 |
| CDY07805 | Canola | nucleus | 78.31 | 78.31 |
| CDY34887 | Canola | cytosol | 77.11 | 77.11 |
| AT1G60010.1 | Thale cress | cytosol | 63.86 | 61.27 |
| Solyc05g006030.2.1 | Tomato | cytosol | 51.81 | 51.81 |
| PGSC0003DMT400040233 | Potato | mitochondrion | 51.2 | 51.52 |
| VIT_01s0026g00730.t01 | Wine grape | cytosol | 53.61 | 50.86 |
| KRH69484 | Soybean | cytosol | 51.81 | 50.0 |
| KRH74672 | Soybean | cytosol | 51.2 | 49.42 |
| KRH45741 | Soybean | cytosol | 48.19 | 45.45 |
| KRG99257 | Soybean | cytosol | 47.59 | 45.4 |
| GSMUA_Achr5P23980_001 | Banana | cytosol | 36.14 | 43.8 |
| KXG30786 | Sorghum | cytosol | 42.17 | 41.67 |
| AT5G50090.1 | Thale cress | cytosol | 39.76 | 41.51 |
| AT5G62900.1 | Thale cress | cytosol | 39.16 | 40.37 |
| GSMUA_Achr9P28200_001 | Banana | cytosol | 39.76 | 39.52 |
| Zm00001d017998_P001 | Maize | cytosol | 39.76 | 38.15 |
| TraesCS7D01G194000.1 | Wheat | cytosol | 36.75 | 37.65 |
| TraesCS7B01G098100.1 | Wheat | cytosol | 37.35 | 37.35 |
| TraesCS7A01G192700.1 | Wheat | cytosol | 37.35 | 37.13 |
| GSMUA_Achr3P06040_001 | Banana | cytosol | 39.16 | 36.93 |
| GSMUA_Achr9P18270_001 | Banana | cytosol | 40.36 | 36.81 |
| KXG19676 | Sorghum | cytosol | 38.55 | 36.78 |
| TraesCS6A01G309500.1 | Wheat | cytosol | 39.76 | 36.67 |
| Os02t0741700-01 | Rice | cytosol | 36.14 | 36.14 |
| TraesCS6D01G288900.1 | Wheat | cytosol | 39.16 | 36.11 |
| TraesCS6B01G339300.1 | Wheat | cytosol | 39.16 | 36.11 |
| Zm00001d052277_P001 | Maize | cytosol | 36.14 | 35.71 |
| GSMUA_Achr3P10380_001 | Banana | cytosol, nucleus, plastid | 39.76 | 35.68 |
| HORVU6Hr1G076380.4 | Barley | cytosol | 36.75 | 35.47 |
| EER96686 | Sorghum | cytosol | 37.35 | 34.64 |
| Zm00001d037251_P001 | Maize | cytosol | 36.75 | 33.7 |
| OQU80443 | Sorghum | cytosol | 37.35 | 33.51 |
| TraesCS5A01G200100.1 | Wheat | cytosol | 39.16 | 32.99 |
| Os06t0236300-01 | Rice | cytosol | 37.35 | 32.8 |
| Zm00001d020348_P001 | Maize | cytosol | 36.14 | 32.61 |
| HORVU5Hr1G059690.7 | Barley | nucleus | 39.76 | 32.51 |
| TraesCS5B01G198500.1 | Wheat | cytosol | 39.16 | 32.5 |
| TraesCS5D01G205700.1 | Wheat | cytosol | 39.16 | 32.5 |
| Zm00001d044783_P001 | Maize | cytosol | 33.73 | 32.18 |
| TraesCS5B01G198400.1 | Wheat | cytosol | 38.55 | 32.0 |
| HORVU7Hr1G039390.1 | Barley | cytosol | 31.93 | 31.93 |
| Zm00001d032324_P001 | Maize | cytosol | 35.54 | 31.72 |
| Os09t0381600-01 | Rice | cytosol | 39.16 | 31.25 |
| Os08t0420700-01 | Rice | cytosol, nucleus, plastid | 34.94 | 30.69 |
| HORVU7Hr1G039360.7 | Barley | cytosol | 31.33 | 29.89 |
| AT5G67620.1 | Thale cress | nucleus | 31.93 | 29.12 |
| TraesCS2A01G084700.1 | Wheat | cytosol | 33.73 | 28.0 |
| TraesCS2A01G084600.1 | Wheat | cytosol | 32.53 | 27.27 |
| TraesCS2D01G082400.1 | Wheat | cytosol, mitochondrion, nucleus | 32.53 | 27.14 |
| TraesCS2D01G082300.1 | Wheat | cytosol | 32.53 | 27.0 |
| HORVU2Hr1G013820.4 | Barley | cytosol | 32.53 | 26.73 |
| TraesCS2B01G099400.1 | Wheat | cytosol | 32.53 | 26.73 |
| TraesCS2D01G082600.1 | Wheat | cytosol | 32.53 | 26.73 |
| TraesCS2D01G082500.1 | Wheat | cytosol | 31.33 | 26.67 |
| TraesCS2B01G099200.1 | Wheat | nucleus | 31.33 | 26.0 |
| TraesCS2A01G084400.1 | Wheat | cytosol | 31.33 | 26.0 |
| TraesCS2A01G084500.1 | Wheat | cytosol | 31.93 | 25.85 |
| TraesCS2B01G099100.1 | Wheat | nucleus | 30.72 | 25.5 |
| TraesCS2B01G098900.1 | Wheat | nucleus, plastid | 20.48 | 18.78 |
Protein Annotations
| ArrayExpress:AT1G10530 | EMBL:AK228105 | EMBL:BT009710 | EnsemblPlants:AT1G10530.1 | EnsemblPlantsGene:AT1G10530 | EntrezGene:837594 |
| InterPro:DUF4228_plant | PANTHER:PTHR33413 | PANTHER:PTHR33413:SF4 | PFAM:PF14009 | ProteinID:AEE28591.1 | ProteinID:OAP19712.1 |
| RefSeq:AT1G10530 | RefSeq:AT1G10530-TAIR-G | RefSeq:NP_172523.1 | TAIR:AT1G10530 | TAIR:AT1G10530.1 | Unigene:At.42176 |
| UniParc:UPI0000162D0B | UniProt:A0A178WR91 | UniProt:Q7XJ59 | MapMan:35.2 | : | : |
Description
At1g10530 [Source:UniProtKB/TrEMBL;Acc:Q7XJ59]
Coordinates
chr1:-:3471456..3472674
Molecular Weight (calculated)
18812.9 Da
IEP (calculated)
10.669
GRAVY (calculated)
-0.610
Length
166 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNCQAVNAA VLVLQHPGGI IDRYYSSVSV TEVMAMYPGH YVSLIIPLSE EEEKNIPATE KGDDKKQRKA VRFTRVQLLR PTENLVLGHA YRLITSQEVM
101: KVLREKKSAK TKKHQIEKTT TAKKFSDKKV PEKKQGKQFR VIRNSTSLLK SKTWRPSLQS ISEATS
101: KVLREKKSAK TKKHQIEKTT TAKKFSDKKV PEKKQGKQFR VIRNSTSLLK SKTWRPSLQS ISEATS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.