Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G084400.1 | Wheat | cytosol | 93.0 | 93.0 |
| TraesCS2D01G082300.1 | Wheat | cytosol | 86.0 | 86.0 |
| TraesCS2B01G099200.1 | Wheat | nucleus | 84.5 | 84.5 |
| TraesCS2B01G099400.1 | Wheat | cytosol | 79.5 | 78.71 |
| TraesCS2B01G098900.1 | Wheat | nucleus, plastid | 61.5 | 67.96 |
| GSMUA_Achr5P23980_001 | Banana | cytosol | 36.5 | 53.28 |
| OQU80443 | Sorghum | cytosol | 48.0 | 51.89 |
| Os08t0420700-01 | Rice | cytosol, nucleus, plastid | 45.5 | 48.15 |
| Zm00001d032324_P001 | Maize | cytosol | 44.0 | 47.31 |
| GSMUA_Achr9P28200_001 | Banana | cytosol | 39.5 | 47.31 |
| TraesCS7B01G098100.1 | Wheat | cytosol | 39.0 | 46.99 |
| TraesCS6B01G339300.1 | Wheat | cytosol | 41.5 | 46.11 |
| GSMUA_Achr9P18270_001 | Banana | cytosol | 41.0 | 45.05 |
| TraesCS5B01G198500.1 | Wheat | cytosol | 45.0 | 45.0 |
| TraesCS5B01G198400.1 | Wheat | cytosol | 44.5 | 44.5 |
| GSMUA_Achr3P06040_001 | Banana | cytosol | 39.0 | 44.32 |
| GSMUA_Achr3P10380_001 | Banana | cytosol, nucleus, plastid | 40.5 | 43.78 |
| KRG99257 | Soybean | cytosol | 36.0 | 41.38 |
| KRH45741 | Soybean | cytosol | 36.0 | 40.91 |
| KRH74672 | Soybean | cytosol | 35.0 | 40.7 |
| VIT_01s0026g00730.t01 | Wine grape | cytosol | 35.5 | 40.57 |
| AT5G50090.1 | Thale cress | cytosol | 32.0 | 40.25 |
| KRH69484 | Soybean | cytosol | 34.5 | 40.12 |
| PGSC0003DMT400040233 | Potato | mitochondrion | 33.0 | 40.0 |
| Solyc05g006030.2.1 | Tomato | cytosol | 32.0 | 38.55 |
| Bra000609.1-P | Field mustard | cytosol | 30.0 | 38.22 |
| KRH63480 | Soybean | cytosol | 33.0 | 38.15 |
| AT5G62900.1 | Thale cress | cytosol | 30.5 | 37.89 |
| KRH03351 | Soybean | cytosol | 34.0 | 37.36 |
| KRH57030 | Soybean | cytosol | 33.5 | 37.22 |
| KRH54436 | Soybean | cytosol | 33.5 | 37.02 |
| CDY21433 | Canola | cytosol | 29.0 | 36.94 |
| PGSC0003DMT400083024 | Potato | cytosol | 29.5 | 36.65 |
| CDY00334 | Canola | nucleus | 29.0 | 36.25 |
| Bra010130.1-P | Field mustard | nucleus | 29.0 | 36.25 |
| CDX84364 | Canola | cytosol | 29.0 | 36.25 |
| Solyc06g071320.2.1 | Tomato | cytosol | 28.0 | 36.13 |
| VIT_17s0000g07840.t01 | Wine grape | cytosol | 33.0 | 35.87 |
| AT1G60010.1 | Thale cress | cytosol | 31.0 | 35.84 |
| CDY69854 | Canola | cytosol | 31.0 | 35.23 |
| Bra027820.1-P | Field mustard | cytosol | 31.0 | 35.03 |
| Bra035410.1-P | Field mustard | cytosol | 30.5 | 34.86 |
| CDY24507 | Canola | cytosol | 30.5 | 34.86 |
| CDY70563 | Canola | cytosol | 31.0 | 34.64 |
| CDY30923 | Canola | cytosol | 30.5 | 34.46 |
| Solyc03g114020.2.1 | Tomato | cytosol | 32.0 | 34.22 |
| Bra035874.1-P | Field mustard | cytosol | 28.5 | 34.13 |
| PGSC0003DMT400063216 | Potato | cytosol | 31.5 | 33.69 |
| CDY07805 | Canola | nucleus | 26.0 | 31.33 |
| CDX87268 | Canola | cytosol | 25.0 | 31.25 |
| TraesCS4B01G260900.1 | Wheat | cytosol | 34.5 | 30.94 |
| Bra031717.1-P | Field mustard | cytosol | 25.5 | 30.72 |
| AT1G10530.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 25.5 | 30.72 |
| CDY34887 | Canola | cytosol | 25.5 | 30.72 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G099100.1 | EnsemblPlantsGene:TraesCS2B01G099100 | InterPro:DUF4228_plant | PANTHER:PTHR33413 | PANTHER:PTHR33413:SF13 | PFAM:PF14009 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr2B:+:58773406..58774165
Molecular Weight (calculated)
22267.2 Da
IEP (calculated)
10.403
GRAVY (calculated)
-0.945
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNCQAADAA AVVIQHSGDG KVERLHWPTT AADVMRRNPG HYVALVVLHH VDAEPEPAVA GENGGARITK IKLLKPKDTL LLGQVYRLIT SQEVTKAVQA
101: RKQERMRGCD EVIEQQRPRL YRRRQQQRPR GDDAATAANG EQSQPADHQE RKRLEKDRHH RSITAARGRG RGGHWRPALQ SITESSSSAS GHTDCEDTRK
101: RKQERMRGCD EVIEQQRPRL YRRRQQQRPR GDDAATAANG EQSQPADHQE RKRLEKDRHH RSITAARGRG RGGHWRPALQ SITESSSSAS GHTDCEDTRK
001: MGNCQAVDAA ALVLQHPDGK IDRYYGPVSV SEIMRMYPGH YVSLIIPLPE KNIPATTTTT DDKSERKVVR FTRVKLLRPT ENLVLGHAYR LITSQEVMKV
101: LRAKKYAKTK KHQSETSKEK KKPSSEKKID EESDKNQNLE TKDEKQRSVL TNSASSRSKT WRPSLQSISE ATS
101: LRAKKYAKTK KHQSETSKEK KKPSSEKKID EESDKNQNLE TKDEKQRSVL TNSASSRSKT WRPSLQSISE ATS
Arabidopsis Description
D-ribose-binding periplasmic protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUJ2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.