Factsheet for VIT_01s0026g00730.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_19s0015g01790.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G60010.1	VIT_19s0015g01790.t01	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g006030.2.1	Tomato	cytosol	59.43	62.65
PGSC0003DMT400040233	Potato	mitochondrion	57.71	61.21
KRH69484	Soybean	cytosol	58.86	59.88
KRH74672	Soybean	cytosol	57.14	58.14
AT1G60010.1	Thale cress	cytosol	57.14	57.8
AT1G10530.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	50.86	53.61
CDY69854	Canola	cytosol	53.71	53.41
CDY24507	Canola	cytosol	53.14	53.14
Bra035410.1-P	Field mustard	cytosol	53.14	53.14
KRG99257	Soybean	cytosol	52.57	52.87
CDY30923	Canola	cytosol	53.14	52.54
KRH45741	Soybean	cytosol	52.57	52.27
Bra027820.1-P	Field mustard	cytosol	52.57	51.98
CDY07805	Canola	nucleus	49.14	51.81
CDY70563	Canola	cytosol	52.57	51.4
Bra031717.1-P	Field mustard	cytosol	48.57	51.2
CDY34887	Canola	cytosol	47.43	50.0
VIT_17s0000g07840.t01	Wine grape	cytosol	51.43	48.91
GSMUA_Achr5P23980_001	Banana	cytosol	37.71	48.18
GSMUA_Achr3P06040_001	Banana	cytosol	46.29	46.02
GSMUA_Achr9P28200_001	Banana	cytosol	43.43	45.51
Zm00001d017998_P001	Maize	cytosol	44.57	45.09
TraesCS7D01G194000.1	Wheat	cytosol	41.71	45.06
GSMUA_Achr9P18270_001	Banana	cytosol	46.29	44.51
KXG30786	Sorghum	cytosol	41.71	43.45
TraesCS7B01G098100.1	Wheat	cytosol	40.0	42.17
TraesCS7A01G192700.1	Wheat	cytosol	40.0	41.92
TraesCS6D01G288900.1	Wheat	cytosol	42.29	41.11
TraesCS6B01G339300.1	Wheat	cytosol	42.29	41.11
TraesCS6A01G309500.1	Wheat	cytosol	42.29	41.11
KXG19676	Sorghum	cytosol	40.57	40.8
GSMUA_Achr3P10380_001	Banana	cytosol, nucleus, plastid	42.86	40.54
Os06t0236300-01	Rice	cytosol	43.43	40.21
OQU80443	Sorghum	cytosol	42.29	40.0
Zm00001d052277_P001	Maize	cytosol	38.29	39.88
EER96686	Sorghum	cytosol	40.57	39.66
Zm00001d044783_P001	Maize	cytosol	39.43	39.66
Os02t0741700-01	Rice	cytosol	37.14	39.16
Zm00001d032324_P001	Maize	cytosol	41.14	38.71
Zm00001d037251_P001	Maize	cytosol	40.0	38.67
Zm00001d020348_P001	Maize	cytosol	40.57	38.59
Os09t0381600-01	Rice	cytosol	44.57	37.5
HORVU6Hr1G076380.4	Barley	cytosol	36.57	37.21
Os08t0420700-01	Rice	cytosol, nucleus, plastid	39.43	36.51
TraesCS2D01G082500.1	Wheat	cytosol	40.57	36.41
HORVU7Hr1G039390.1	Barley	cytosol	34.29	36.14
VIT_00s0802g00020.t01	Wine grape	cytosol	37.14	36.11
TraesCS5A01G200100.1	Wheat	cytosol	40.57	36.04
TraesCS5B01G198500.1	Wheat	cytosol	41.14	36.0
TraesCS2B01G099400.1	Wheat	cytosol	41.14	35.64
TraesCS5D01G205700.1	Wheat	cytosol	40.57	35.5
TraesCS5B01G198400.1	Wheat	cytosol	40.57	35.5
TraesCS2B01G099100.1	Wheat	nucleus	40.57	35.5
TraesCS2A01G084600.1	Wheat	cytosol	40.0	35.35
TraesCS2D01G082400.1	Wheat	cytosol, mitochondrion, nucleus	40.0	35.18
HORVU7Hr1G039360.7	Barley	cytosol	34.86	35.06
TraesCS2A01G084400.1	Wheat	cytosol	40.0	35.0
HORVU5Hr1G059690.7	Barley	nucleus	40.57	34.98
TraesCS2D01G082600.1	Wheat	cytosol	39.43	34.16
HORVU2Hr1G013820.4	Barley	cytosol	39.43	34.16
TraesCS2D01G082300.1	Wheat	cytosol	38.86	34.0
TraesCS2B01G099200.1	Wheat	nucleus	38.86	34.0
TraesCS2A01G084700.1	Wheat	cytosol	38.86	34.0
TraesCS2A01G084500.1	Wheat	cytosol	39.43	33.66
TraesCS2B01G098900.1	Wheat	nucleus, plastid	26.86	25.97

Protein Annotations

EntrezGene:100250100	wikigene:100250100	MapMan:35.2	EMBL:AM487499	ProteinID:CAN79847	ProteinID:CAN79847.1
ProteinID:CBI32089	ProteinID:CBI32089.3	UniProt:D7TNL6	InterPro:DUF4228_plant	EMBL:FN596002	EntrezGene:LOC100250100
wikigene:LOC100250100	PFAM:PF14009	PANTHER:PTHR33413	PANTHER:PTHR33413:SF4	TIGR:TC58401	UniParc:UPI0001982A2C
ArrayExpress:VIT_01s0026g00730	EnsemblPlantsGene:VIT_01s0026g00730	EnsemblPlants:VIT_01s0026g00730.t01	unigene:Vvi.4319	RefSeq:XP_002268639	RefSeq:XP_002268639.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:-:9518105..9519491

Molecular Weight (calculated)

19555.5 Da

IEP (calculated)

10.252

GRAVY (calculated)

-0.610

Length

175 amino acids

Sequence
(BLAST)

001: MGNCQAIDAA ALVIQHPCGR IERLYWTVSA GEVMRMNPGH YVSLIIPLPI PQDHDTPDNK TVRFTRVKLL RPTDTLVLGH AYRLITSQEV MKVLRAKKYA
101: KMKKNQVESA EKLQGMAERQ SSSCEEDGGR SEMEKSNQVV KHERHRPRTA STTSAAAARS KSWRPSLQSI SEAGS

Best Arabidopsis Sequence Match ( AT1G60010.1 )
(BLAST)

001: MGNCQAVDAA ALVLQHPDGK IDRYYGPVSV SEIMRMYPGH YVSLIIPLPE KNIPATTTTT DDKSERKVVR FTRVKLLRPT ENLVLGHAYR LITSQEVMKV
101: LRAKKYAKTK KHQSETSKEK KKPSSEKKID EESDKNQNLE TKDEKQRSVL TNSASSRSKT WRPSLQSISE ATS

Arabidopsis Description

D-ribose-binding periplasmic protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUJ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.