Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G081800.3 | |
| HORVU5Hr1G071910.1 | |
| HORVU7Hr1G048940.3 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G60010.1 | HORVU2Hr1G081800.3 | AT4G26455.1 | 21798944 |
| AT1G60010.1 | HORVU5Hr1G071910.1 | AT4G26455.1 | 21798944 |
| AT1G60010.1 | HORVU7Hr1G048940.3 | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G288900.1 | Wheat | cytosol | 66.28 | 63.33 |
| TraesCS6B01G339300.1 | Wheat | cytosol | 66.28 | 63.33 |
| KXG30786 | Sorghum | cytosol | 61.05 | 62.5 |
| Os02t0741700-01 | Rice | cytosol | 58.14 | 60.24 |
| TraesCS6A01G309500.1 | Wheat | cytosol | 62.79 | 60.0 |
| Zm00001d017998_P001 | Maize | cytosol | 59.88 | 59.54 |
| Zm00001d052277_P001 | Maize | cytosol | 57.56 | 58.93 |
| GSMUA_Achr5P23980_001 | Banana | cytosol | 38.95 | 48.91 |
| HORVU7Hr1G039360.7 | Barley | cytosol | 48.84 | 48.28 |
| HORVU7Hr1G039390.1 | Barley | cytosol | 45.93 | 47.59 |
| GSMUA_Achr9P28200_001 | Banana | cytosol | 41.28 | 42.52 |
| GSMUA_Achr3P10380_001 | Banana | cytosol, nucleus, plastid | 45.35 | 42.16 |
| GSMUA_Achr3P06040_001 | Banana | cytosol | 42.44 | 41.48 |
| GSMUA_Achr9P18270_001 | Banana | cytosol | 43.6 | 41.21 |
| KRH74672 | Soybean | cytosol | 38.37 | 38.37 |
| KRG99257 | Soybean | cytosol | 38.37 | 37.93 |
| HORVU5Hr1G059690.7 | Barley | nucleus | 44.77 | 37.93 |
| KRH69484 | Soybean | cytosol | 37.79 | 37.79 |
| Bra000609.1-P | Field mustard | cytosol | 33.72 | 36.94 |
| KRH45741 | Soybean | cytosol | 37.79 | 36.93 |
| AT1G10530.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 35.47 | 36.75 |
| AT5G62900.1 | Thale cress | cytosol | 34.3 | 36.65 |
| VIT_01s0026g00730.t01 | Wine grape | cytosol | 37.21 | 36.57 |
| CDY21433 | Canola | cytosol | 33.14 | 36.31 |
| CDY00334 | Canola | nucleus | 33.72 | 36.25 |
| CDX84364 | Canola | cytosol | 33.72 | 36.25 |
| Bra010130.1-P | Field mustard | nucleus | 33.72 | 36.25 |
| PGSC0003DMT400040233 | Potato | mitochondrion | 34.3 | 35.76 |
| HORVU2Hr1G013820.4 | Barley | cytosol | 41.86 | 35.64 |
| AT5G50090.1 | Thale cress | cytosol | 32.56 | 35.22 |
| Bra027820.1-P | Field mustard | cytosol | 36.05 | 35.03 |
| Solyc05g006030.2.1 | Tomato | cytosol | 33.72 | 34.94 |
| AT1G60010.1 | Thale cress | cytosol | 34.88 | 34.68 |
| CDY70563 | Canola | cytosol | 36.05 | 34.64 |
| CDY30923 | Canola | cytosol | 35.47 | 34.46 |
| Solyc06g071320.2.1 | Tomato | cytosol | 30.81 | 34.19 |
| CDY69854 | Canola | cytosol | 34.88 | 34.09 |
| Bra031717.1-P | Field mustard | cytosol | 32.56 | 33.73 |
| CDY34887 | Canola | cytosol | 32.56 | 33.73 |
| Bra035410.1-P | Field mustard | cytosol | 34.3 | 33.71 |
| CDY24507 | Canola | cytosol | 34.3 | 33.71 |
| Bra035874.1-P | Field mustard | cytosol | 32.56 | 33.53 |
| KRH03351 | Soybean | cytosol | 35.47 | 33.52 |
| Solyc03g114020.2.1 | Tomato | cytosol | 36.05 | 33.16 |
| VIT_17s0000g07840.t01 | Wine grape | cytosol | 35.47 | 33.15 |
| CDY07805 | Canola | nucleus | 31.98 | 33.13 |
| PGSC0003DMT400063216 | Potato | cytosol | 35.47 | 32.62 |
| KRH63480 | Soybean | cytosol | 32.56 | 32.37 |
| KRH57030 | Soybean | cytosol | 33.72 | 32.22 |
| CDX87268 | Canola | cytosol | 29.07 | 31.25 |
| PGSC0003DMT400083024 | Potato | cytosol | 29.07 | 31.06 |
| KRH54436 | Soybean | cytosol | 31.4 | 29.83 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G076380.4 | EnsemblPlantsGene:HORVU6Hr1G076380 | InterPro:DUF4228_plant | ncoils:Coil | PANTHER:PTHR33413 | PANTHER:PTHR33413:SF6 |
| PFAM:PF14009 | SEG:seg | UniParc:UPI000295C945 | UniProt:M0YS55 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chrchr6H:-:525751044..525752863
Molecular Weight (calculated)
19089.7 Da
IEP (calculated)
7.442
GRAVY (calculated)
-0.422
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNCQAAEVA AAVVQHPGGR VERLYWSAPA AEVMRANPGH YVALVTLRVA EERQDAGARR TVRLTRVKLL KPKETLLLGH VYRLITANEV TKAVQARKEE
101: KLRKARQQLQ QLESSTRQSK LRPAADGDDD DDDDEASLDE SLDQVVTWTC ALFNPTTFFS LSLPMPPCTF SA
101: KLRKARQQLQ QLESSTRQSK LRPAADGDDD DDDDEASLDE SLDQVVTWTC ALFNPTTFFS LSLPMPPCTF SA
001: MGNCQAVDAA ALVLQHPDGK IDRYYGPVSV SEIMRMYPGH YVSLIIPLPE KNIPATTTTT DDKSERKVVR FTRVKLLRPT ENLVLGHAYR LITSQEVMKV
101: LRAKKYAKTK KHQSETSKEK KKPSSEKKID EESDKNQNLE TKDEKQRSVL TNSASSRSKT WRPSLQSISE ATS
101: LRAKKYAKTK KHQSETSKEK KKPSSEKKID EESDKNQNLE TKDEKQRSVL TNSASSRSKT WRPSLQSISE ATS
Arabidopsis Description
D-ribose-binding periplasmic protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUJ2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.