Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G081800.3 | |
| HORVU5Hr1G071910.1 | |
| HORVU7Hr1G048940.3 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G60010.1 | HORVU2Hr1G081800.3 | AT4G26455.1 | 21798944 |
| AT1G60010.1 | HORVU5Hr1G071910.1 | AT4G26455.1 | 21798944 |
| AT1G60010.1 | HORVU7Hr1G048940.3 | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G200100.1 | Wheat | cytosol | 86.21 | 88.83 |
| TraesCS5D01G205700.1 | Wheat | cytosol | 84.24 | 85.5 |
| TraesCS5B01G198500.1 | Wheat | cytosol | 84.24 | 85.5 |
| TraesCS5B01G198400.1 | Wheat | cytosol | 82.76 | 84.0 |
| Zm00001d020348_P001 | Maize | cytosol | 60.59 | 66.85 |
| EER96686 | Sorghum | cytosol | 58.62 | 66.48 |
| Os09t0381600-01 | Rice | cytosol | 66.01 | 64.42 |
| GSMUA_Achr5P23980_001 | Banana | cytosol | 37.44 | 55.47 |
| GSMUA_Achr9P28200_001 | Banana | cytosol | 44.34 | 53.89 |
| GSMUA_Achr9P18270_001 | Banana | cytosol | 42.86 | 47.8 |
| GSMUA_Achr3P10380_001 | Banana | cytosol, nucleus, plastid | 43.35 | 47.57 |
| PGSC0003DMT400040233 | Potato | mitochondrion | 36.45 | 44.85 |
| KRH69484 | Soybean | cytosol | 37.93 | 44.77 |
| HORVU6Hr1G076380.4 | Barley | cytosol | 37.93 | 44.77 |
| GSMUA_Achr3P06040_001 | Banana | cytosol | 38.42 | 44.32 |
| KRH74672 | Soybean | cytosol | 37.44 | 44.19 |
| Solyc05g006030.2.1 | Tomato | cytosol | 35.96 | 43.98 |
| KRH57030 | Soybean | cytosol | 38.92 | 43.89 |
| KRH63480 | Soybean | cytosol | 36.95 | 43.35 |
| HORVU7Hr1G039360.7 | Barley | cytosol | 36.95 | 43.1 |
| HORVU2Hr1G013820.4 | Barley | cytosol | 42.86 | 43.07 |
| KRH03351 | Soybean | cytosol | 38.42 | 42.86 |
| KRG99257 | Soybean | cytosol | 36.45 | 42.53 |
| KRH54436 | Soybean | cytosol | 37.44 | 41.99 |
| HORVU7Hr1G039390.1 | Barley | cytosol | 33.99 | 41.57 |
| KRH45741 | Soybean | cytosol | 35.96 | 41.48 |
| Bra000609.1-P | Field mustard | cytosol | 32.02 | 41.4 |
| Solyc06g071320.2.1 | Tomato | cytosol | 31.53 | 41.29 |
| VIT_01s0026g00730.t01 | Wine grape | cytosol | 34.98 | 40.57 |
| AT5G50090.1 | Thale cress | cytosol | 31.53 | 40.25 |
| AT1G10530.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 32.51 | 39.76 |
| VIT_17s0000g07840.t01 | Wine grape | cytosol | 35.96 | 39.67 |
| CDY00334 | Canola | nucleus | 31.03 | 39.38 |
| Bra010130.1-P | Field mustard | nucleus | 31.03 | 39.38 |
| CDY07805 | Canola | nucleus | 32.02 | 39.16 |
| PGSC0003DMT400083024 | Potato | cytosol | 31.03 | 39.13 |
| CDY30923 | Canola | cytosol | 33.99 | 38.98 |
| Bra027820.1-P | Field mustard | cytosol | 33.99 | 38.98 |
| CDY24507 | Canola | cytosol | 33.5 | 38.86 |
| Bra035410.1-P | Field mustard | cytosol | 33.5 | 38.86 |
| CDX84364 | Canola | cytosol | 30.54 | 38.75 |
| AT1G60010.1 | Thale cress | cytosol | 33.0 | 38.73 |
| CDY69854 | Canola | cytosol | 33.5 | 38.64 |
| Bra031717.1-P | Field mustard | cytosol | 31.53 | 38.55 |
| CDY70563 | Canola | cytosol | 33.99 | 38.55 |
| CDY34887 | Canola | cytosol | 31.03 | 37.95 |
| AT5G62900.1 | Thale cress | cytosol | 30.05 | 37.89 |
| CDY21433 | Canola | cytosol | 29.06 | 37.58 |
| PGSC0003DMT400063216 | Potato | cytosol | 34.48 | 37.43 |
| Solyc03g114020.2.1 | Tomato | cytosol | 33.5 | 36.36 |
| Bra035874.1-P | Field mustard | cytosol | 29.56 | 35.93 |
| CDX87268 | Canola | cytosol | 28.08 | 35.62 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G059690.7 | EnsemblPlantsGene:HORVU5Hr1G059690 | InterPro:DUF4228_plant | PANTHER:PTHR33413 | PANTHER:PTHR33413:SF7 | PFAM:PF14009 |
| SEG:seg | UniParc:UPI000B4886E4 | UniProt:A0A287RE27 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chrchr5H:+:466197591..466198437
Molecular Weight (calculated)
21320.0 Da
IEP (calculated)
10.156
GRAVY (calculated)
-0.567
Length
203 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNCQAAEAA EVIVQHPGGK VERLYWPTPA AEVMKTNPGH YVALVILRLS PDDKAAAGDE AAAAAAVAGA GAAAKITRVK LLKPKDTLHL GQVYRLITAQ
101: EVTKALRARK SDKMRRCEAI KQQHDQLRRG DGAEQAASDK VSAPLHSPDD RGEKDRHRSS GGAQPAGSGR GRHWRPSLQS ISEAAAGQSS SSSASSISES
201: TAS
101: EVTKALRARK SDKMRRCEAI KQQHDQLRRG DGAEQAASDK VSAPLHSPDD RGEKDRHRSS GGAQPAGSGR GRHWRPSLQS ISEAAAGQSS SSSASSISES
201: TAS
001: MGNCQAVDAA ALVLQHPDGK IDRYYGPVSV SEIMRMYPGH YVSLIIPLPE KNIPATTTTT DDKSERKVVR FTRVKLLRPT ENLVLGHAYR LITSQEVMKV
101: LRAKKYAKTK KHQSETSKEK KKPSSEKKID EESDKNQNLE TKDEKQRSVL TNSASSRSKT WRPSLQSISE ATS
101: LRAKKYAKTK KHQSETSKEK KKPSSEKKID EESDKNQNLE TKDEKQRSVL TNSASSRSKT WRPSLQSISE ATS
Arabidopsis Description
D-ribose-binding periplasmic protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUJ2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.