Factsheet for PGSC0003DMT400040233

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400022426
PGSC0003DMT400056956

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G60010.1	PGSC0003DMT400022426	AT4G26455.1	21798944
AT1G60010.1	PGSC0003DMT400056956	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g006030.2.1	Tomato	cytosol	80.61	80.12
VIT_01s0026g00730.t01	Wine grape	cytosol	61.21	57.71
KRH69484	Soybean	cytosol	60.0	57.56
KRH74672	Soybean	cytosol	59.39	56.98
AT1G60010.1	Thale cress	cytosol	58.79	56.07
KRG99257	Soybean	cytosol	56.97	54.02
KRH45741	Soybean	cytosol	56.97	53.41
CDY07805	Canola	nucleus	52.12	51.81
CDY30923	Canola	cytosol	55.15	51.41
Bra031717.1-P	Field mustard	cytosol	51.52	51.2
AT1G10530.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	51.52	51.2
Bra027820.1-P	Field mustard	cytosol	54.55	50.85
CDY70563	Canola	cytosol	54.55	50.28
CDY34887	Canola	cytosol	50.3	50.0
Bra035410.1-P	Field mustard	cytosol	52.73	49.71
CDY24507	Canola	cytosol	52.73	49.71
CDY69854	Canola	cytosol	52.73	49.43
GSMUA_Achr5P23980_001	Banana	cytosol	38.79	46.72
GSMUA_Achr3P06040_001	Banana	cytosol	46.67	43.75
GSMUA_Achr9P28200_001	Banana	cytosol	43.03	42.52
PGSC0003DMT400083024	Potato	cytosol	41.21	42.24
KXG30786	Sorghum	cytosol	42.42	41.67
PGSC0003DMT400063216	Potato	cytosol	46.06	40.64
Zm00001d020348_P001	Maize	cytosol	44.24	39.67
GSMUA_Achr9P18270_001	Banana	cytosol	43.64	39.56
Zm00001d037251_P001	Maize	cytosol	43.03	39.23
EER96686	Sorghum	cytosol	42.42	39.11
KXG19676	Sorghum	cytosol	40.61	38.51
TraesCS7D01G194000.1	Wheat	cytosol	37.58	38.27
Zm00001d017998_P001	Maize	cytosol	40.0	38.15
Os02t0741700-01	Rice	cytosol	38.18	37.95
TraesCS7B01G098100.1	Wheat	cytosol	38.18	37.95
GSMUA_Achr3P10380_001	Banana	cytosol, nucleus, plastid	42.42	37.84
TraesCS7A01G192700.1	Wheat	cytosol	38.18	37.72
TraesCS6A01G309500.1	Wheat	cytosol	40.61	37.22
TraesCS5A01G200100.1	Wheat	cytosol	44.24	37.06
Os06t0236300-01	Rice	cytosol	42.42	37.04
Os09t0381600-01	Rice	cytosol	46.06	36.54
TraesCS5B01G198500.1	Wheat	cytosol	44.24	36.5
HORVU5Hr1G059690.7	Barley	nucleus	44.85	36.45
TraesCS6D01G288900.1	Wheat	cytosol	39.39	36.11
TraesCS6B01G339300.1	Wheat	cytosol	39.39	36.11
TraesCS5D01G205700.1	Wheat	cytosol	43.64	36.0
TraesCS5B01G198400.1	Wheat	cytosol	43.64	36.0
Zm00001d052277_P001	Maize	cytosol	36.36	35.71
Zm00001d044783_P001	Maize	cytosol	37.58	35.63
Zm00001d032324_P001	Maize	cytosol	40.0	35.48
Os08t0420700-01	Rice	cytosol, nucleus, plastid	40.61	35.45
OQU80443	Sorghum	cytosol	39.39	35.14
HORVU6Hr1G076380.4	Barley	cytosol	35.76	34.3
TraesCS2D01G082500.1	Wheat	cytosol	40.0	33.85
TraesCS2D01G082400.1	Wheat	cytosol, mitochondrion, nucleus	40.61	33.67
TraesCS2A01G084700.1	Wheat	cytosol	40.61	33.5
TraesCS2A01G084600.1	Wheat	cytosol	40.0	33.33
PGSC0003DMT400055171	Potato	cytosol	35.76	33.33
TraesCS2B01G099400.1	Wheat	cytosol	40.61	33.17
TraesCS2D01G082300.1	Wheat	cytosol	40.0	33.0
TraesCS2B01G099100.1	Wheat	nucleus	40.0	33.0
HORVU2Hr1G013820.4	Barley	cytosol	40.0	32.67
TraesCS2D01G082600.1	Wheat	cytosol	40.0	32.67
TraesCS2A01G084400.1	Wheat	cytosol	39.39	32.5
TraesCS2B01G099200.1	Wheat	nucleus	39.39	32.5
HORVU7Hr1G039360.7	Barley	cytosol	32.73	31.03
TraesCS2A01G084500.1	Wheat	cytosol	38.18	30.73
HORVU7Hr1G039390.1	Barley	cytosol	30.91	30.72
TraesCS2B01G098900.1	Wheat	nucleus, plastid	27.27	24.86

Protein Annotations

EnsemblPlants:PGSC0003DMT400040233	EnsemblPlantsGene:PGSC0003DMG400015574	EntrezGene:102578241	InterPro:DUF4228_plant	PANTHER:PTHR33413	PANTHER:PTHR33413:SF4
PFAM:PF14009	PGSC:PGSC0003DMG400015574	RefSeq:XP_006355946.1	UniParc:UPI000295E881	UniProt:M1B9K3	MapMan:35.2

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400015574]

Coordinates

chr5:-:7306514..7308265

Molecular Weight (calculated)

18459.1 Da

IEP (calculated)

10.772

GRAVY (calculated)

-0.765

Length

165 amino acids

Sequence
(BLAST)

001: MGNCQAVDAA ALVIQHPSGK TDRMYWPMTA SEVMKMNPGH YVSLIIPLPN NSDDKTVRFT RVKLLRPTDT LVLGRAYRLV TTQEVMKVLR AKKHAKMKKN
101: QPELQENQRS SCELEARNSE SDKNKAIRHE GNRQRPGTTN LAAGAAASRS KSWRPSLQSI SESNS

Best Arabidopsis Sequence Match ( AT1G60010.1 )
(BLAST)

001: MGNCQAVDAA ALVLQHPDGK IDRYYGPVSV SEIMRMYPGH YVSLIIPLPE KNIPATTTTT DDKSERKVVR FTRVKLLRPT ENLVLGHAYR LITSQEVMKV
101: LRAKKYAKTK KHQSETSKEK KKPSSEKKID EESDKNQNLE TKDEKQRSVL TNSASSRSKT WRPSLQSISE ATS

Arabidopsis Description

D-ribose-binding periplasmic protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUJ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.