Factsheet for TraesCS5A01G287400.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear, cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G295300.1	Wheat	cytosol	100.0	100.0
TraesCS5B01G286900.1	Wheat	cytosol	100.0	100.0
TraesCS1A01G308400.1	Wheat	cytosol	98.39	98.39
Os05t0490800-01	Rice	cytosol, plasma membrane	95.58	95.58
PGSC0003DMT400018521	Potato	cytosol	87.95	87.95
Solyc10g077030.1.1	Tomato	extracellular	87.55	87.55
PGSC0003DMT400072226	Potato	cytosol	87.55	87.55
VIT_08s0040g00410.t01	Wine grape	cytosol	87.15	87.15
GSMUA_Achr4P10040_001	Banana	cytosol	87.15	87.15
Solyc10g081130.1.1	Tomato	extracellular, plastid	86.75	86.75
KRG94269	Soybean	cytosol	86.35	86.35
GSMUA_Achr8P23960_001	Banana	cytosol	86.35	86.35
Bra034316.1-P	Field mustard	cytosol	83.13	83.13
CDY04473	Canola	cytosol	83.13	83.13
CDY48190	Canola	cytosol	83.13	83.13
CDX71476	Canola	cytosol	82.73	82.73
CDX77059	Canola	cytosol	82.33	82.33
KRH57704	Soybean	cytosol, endoplasmic reticulum	81.12	77.39
AT2G27020.2	Thale cress	cytoskeleton, cytosol, nucleus	83.13	58.97
TraesCS2A01G189400.1	Wheat	cytosol	29.32	31.06
TraesCS3A01G285600.1	Wheat	cytosol	29.32	31.06
TraesCS4A01G008300.1	Wheat	cytosol, golgi, plastid, unclear	30.52	30.89
TraesCS7A01G130500.1	Wheat	plastid	30.92	30.8
TraesCS4A01G167300.1	Wheat	peroxisome	28.51	29.96
TraesCS5A01G329300.1	Wheat	cytosol	29.72	29.72
TraesCS7A01G272000.1	Wheat	cytosol	29.72	29.72
TraesCS6A01G097800.1	Wheat	unclear	32.53	28.12
TraesCS2A01G170100.1	Wheat	mitochondrion	24.1	22.39
TraesCS5A01G109000.1	Wheat	peroxisome	16.47	21.13

Protein Annotations

MapMan:19.2.6.1.1.7	Gene3D:3.60.20.10	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175
GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005839	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
GO:GO:0019773	GO:GO:0051603	InterPro:IPR023332	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227
PFAM:PF10584	ScanProsite:PS00388	PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF101	InterPro:Proteasome_alpha-type
InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b	SMART:SM00948	SUPFAM:SSF56235	EnsemblPlantsGene:TraesCS5A01G287400	EnsemblPlants:TraesCS5A01G287400.1
TIGR:cd03751	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5A:+:495319376..495322373

Molecular Weight (calculated)

27168.5 Da

IEP (calculated)

6.049

GRAVY (calculated)

-0.196

Length

249 amino acids

Sequence
(BLAST)

001: MSSIGTGYDL SVTTFSPDGR VFQVEYAGKA VDNSGTIVGI KCKDGIVLGV EKLITSKMIL AGSNRRLHSV HRNSGLAVAG LAADGRQIVS RAKSEAANYE
101: KVYGEPMPVK ELADRVASYV HLCTLYWWLR PFGCGVILGG YDRDGPQLYM IEPSGLSYKY FGAALGKGRQ AAKTEIEKLK LSELTCREGI VEVAKIIYGV
201: HDEAKDKSFE LELSWVCEES NRQHEKVPSD LLEQAKAAAQ AALEEMDAD

Best Arabidopsis Sequence Match ( AT2G27020.2 )
(BLAST)

001: MWLIIQNYTK EENHLKIFTI PLKDYQRMGQ IIILIKPVNN RIDPPDKTTR IVLISNPESD GAPKIWLVSG LRTKKTPFFD LSLNHSTKKK SEKSQRKKKS
101: RKMSSIGTGY DLSVTTFSPD GRVFQIEYAA KAVDNSGTVV GIKCKDGIVM GVEKLIASKM MLPGSNRRIH SVHRHAGMAV AGLAADGRQI VARAKSEARS
201: YESVYGDAVP VKELSERVAS YVHLCTLYWW LRPFGCGVIL GGYDRDGPQL YMIEPSGISY RYFGAAIGKG KQAAKTEIEK LNLSEMTCKE GVIEVAKIIY
301: KLHDEAKDKA FELEMSWICE ESKREHQKVP DDLLEEAKTA AKTALEEMDA D

Arabidopsis Description

PAG120S proteasome alpha subunit G1 [Source:TAIR;Acc:AT2G27020]
SUBAcon: [cytoskeleton,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.