CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, endoplasmic reticulum

Predictor Summary:

cytosol 5
plastid 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG94269	Soybean	cytosol	87.36	91.57
EES01630	Sorghum	cytosol	68.58	87.75
PGSC0003DMT400072226	Potato	cytosol	83.52	87.55
VIT_08s0040g00410.t01	Wine grape	cytosol	83.52	87.55
Solyc10g081130.1.1	Tomato	extracellular, plastid	83.14	87.15
Solyc10g077030.1.1	Tomato	extracellular	82.76	86.75
PGSC0003DMT400018521	Potato	cytosol	82.38	86.35
GSMUA_Achr4P10040_001	Banana	cytosol	80.84	84.74
GSMUA_Achr8P23960_001	Banana	cytosol	80.84	84.74
TraesCS1A01G308400.1	Wheat	cytosol	78.16	81.93
Os01t0811100-01	Rice	cytosol	77.78	81.53
TraesCS1B01G319100.1	Wheat	cytosol	77.78	81.53
TraesCS1D01G307800.1	Wheat	cytosol	77.78	81.53
HORVU1Hr1G068490.1	Barley	cytosol	77.39	81.12
TraesCS5D01G295300.1	Wheat	cytosol	77.39	81.12
TraesCS5B01G286900.1	Wheat	cytosol	77.39	81.12
TraesCS5A01G287400.1	Wheat	cytosol, golgi, unclear	77.39	81.12
HORVU0Hr1G001180.1	Barley	cytosol	77.39	81.12
CDY48190	Canola	cytosol	77.39	81.12
CDY04473	Canola	cytosol	77.39	81.12
Bra034316.1-P	Field mustard	cytosol	77.39	81.12
Os05t0490800-01	Rice	cytosol, plasma membrane	77.39	81.12
EER97635	Sorghum	cytosol	77.01	80.72
CDX71476	Canola	cytosol	77.01	80.72
CDX77059	Canola	cytosol	76.63	80.32
Zm00001d012546_P002	Maize	cytosol	77.39	78.91
Zm00001d043137_P004	Maize	cytosol	77.01	78.21
Zm00001d022316_P001	Maize	cytosol	77.39	73.45
HORVU5Hr1G076600.1	Barley	plastid	67.43	67.95
AT2G27020.2	Thale cress	cytoskeleton, cytosol, nucleus	77.39	57.55
Zm00001d007038_P001	Maize	cytosol	77.78	52.32
KRH65961	Soybean	cytosol	29.12	32.34
KRH75739	Soybean	cytosol, endoplasmic reticulum, nucleus	29.12	32.34
KRH13728	Soybean	cytosol	29.12	32.34
KRH43728	Soybean	cytosol, endoplasmic reticulum, nucleus	29.12	32.34
KRH31817	Soybean	cytosol	27.59	30.38
KRG90710	Soybean	peroxisome	27.59	30.38
KRH36037	Soybean	endoplasmic reticulum, nucleus	27.59	30.38
KRH49455	Soybean	endoplasmic reticulum, nucleus	28.74	30.0
KRH00322	Soybean	cytosol	28.74	30.0
KRH76017	Soybean	cytosol	28.74	30.0
KRH65617	Soybean	nucleus	28.74	30.0
KRH69234	Soybean	endoplasmic reticulum	27.2	29.96
KRH55422	Soybean	cytosol, endoplasmic reticulum	26.82	28.46
KRH26034	Soybean	nucleus	26.82	28.46
KRH05846	Soybean	cytosol, nucleus	29.12	26.76
KRH38836	Soybean	cytosol, nucleus	29.12	26.67
KRH69759	Soybean	endoplasmic reticulum, nucleus	25.29	26.51
KRH15173	Soybean	cytosol, nucleus	29.12	26.39
KRH08047	Soybean	cytosol, endoplasmic reticulum, nucleus	24.9	26.1
KRH57899	Soybean	cytosol	14.56	24.84
KRH20407	Soybean	cytosol	9.96	16.99

Protein Annotations

EntrezGene:100820387	MapMan:19.2.6.1.1.7	Gene3D:3.60.20.10	EMBL:ACUP02002881	EnsemblPlantsGene:GLYMA_05G079000	GO:GO:0000502
GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	GO:GO:0019773	GO:GO:0051603	UniProt:I1K1X5	InterPro:IPR023332	InterPro:IPR029055
EnsemblPlants:KRH57704	ProteinID:KRH57704	ProteinID:KRH57704.1	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFAM:PF10584
ScanProsite:PS00388	PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF103	InterPro:Proteasome_alpha-type	InterPro:Proteasome_alpha3
InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b	SMART:SM00948	SUPFAM:SSF56235	UniParc:UPI00023C420A	:

Description

hypothetical protein

Coordinates

chr5:+:10692511..10698161

Molecular Weight (calculated)

28749.6 Da

IEP (calculated)

7.049

GRAVY (calculated)

-0.059

Length

261 amino acids

Sequence
(BLAST)

001: MSSIGTGYDL SVTTFSPDGR VFQIEYAAKA VDNSGTVIGI KCKDGVVLGV EKLIPSKMML PGSNRRIHSV HRHSGMAVAG LAADGRQIVA RAKSEATNYD
101: SVYGEPIPVK ELADRVASYV HLCTLYWWLR PFGCGVILGG YDRDGPQLYM VEPSGVSYRY FGAAIGKGRQ AAKTEIEKLK LADMTCRQGV IEVAKIIYGV
201: HDEAKDKDFE LEMSWVCDES NRQHEKVRLG CAFGDNDQCA SFVIGCNFII YFFCFLAESI K

Best Arabidopsis Sequence Match ( AT2G27020.2 )
(BLAST)

001: MWLIIQNYTK EENHLKIFTI PLKDYQRMGQ IIILIKPVNN RIDPPDKTTR IVLISNPESD GAPKIWLVSG LRTKKTPFFD LSLNHSTKKK SEKSQRKKKS
101: RKMSSIGTGY DLSVTTFSPD GRVFQIEYAA KAVDNSGTVV GIKCKDGIVM GVEKLIASKM MLPGSNRRIH SVHRHAGMAV AGLAADGRQI VARAKSEARS
201: YESVYGDAVP VKELSERVAS YVHLCTLYWW LRPFGCGVIL GGYDRDGPQL YMIEPSGISY RYFGAAIGKG KQAAKTEIEK LNLSEMTCKE GVIEVAKIIY
301: KLHDEAKDKA FELEMSWICE ESKREHQKVP DDLLEEAKTA AKTALEEMDA D

Arabidopsis Description

PAG120S proteasome alpha subunit G1 [Source:TAIR;Acc:AT2G27020]
SUBAcon: [cytosol,nucleus,cytoskeleton]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.