CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 2
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008402.1-P	Field mustard	cytosol	100.0	100.0
AT1G16470.2	Thale cress	cytosol	100.0	100.0
CDY26894	Canola	cytosol	100.0	100.0
CDX68003	Canola	cytosol, extracellular	99.15	99.15
CDX79306	Canola	cytosol	98.72	98.72
KRH43728	Soybean	cytosol, endoplasmic reticulum, nucleus	94.47	94.47
Solyc10g008010.2.1	Tomato	extracellular, plastid	94.04	94.04
KRH13728	Soybean	cytosol	94.04	94.04
VIT_01s0011g01960.t01	Wine grape	cytosol	93.62	93.62
Solyc07g055080.2.1	Tomato	cytosol, endoplasmic reticulum	93.62	93.62
PGSC0003DMT400052657	Potato	cytosol	93.62	93.62
PGSC0003DMT400027339	Potato	cytosol	93.62	93.62
KRH75739	Soybean	cytosol, endoplasmic reticulum, nucleus	93.62	93.62
KRH65961	Soybean	cytosol	93.19	93.19
GSMUA_Achr5P19360_001	Banana	cytosol	92.34	92.34
EER94765	Sorghum	cytosol	91.06	91.06
EES05472	Sorghum	cytosol	91.06	91.06
TraesCS3A01G285600.1	Wheat	cytosol	91.06	91.06
TraesCS2D01G198400.1	Wheat	cytosol	91.06	91.06
TraesCS2B01G217800.1	Wheat	cytosol	91.06	91.06
TraesCS2A01G189400.1	Wheat	cytosol	91.06	91.06
HORVU3Hr1G068660.1	Barley	cytosol	91.06	91.06
TraesCS3D01G285400.1	Wheat	cytosol	90.64	90.64
GSMUA_Achr8P13980_001	Banana	cytosol	90.64	90.64
Os02t0634900-01	Rice	cytosol, plasma membrane	90.64	90.64
Os03t0387100-01	Rice	cytosol, plasma membrane	90.21	90.21
Zm00001d017336_P007	Maize	cytosol	91.06	89.17
Zm00001d017338_P006	Maize	cytosol	91.06	89.17
TraesCS3B01G319500.1	Wheat	cytosol	91.06	88.43
CDX88517	Canola	cytosol	99.57	76.22
HORVU2Hr1G036390.6	Barley	plastid	87.23	75.93
CDX87400	Canola	extracellular	99.15	72.81
Zm00001d017340_P002	Maize	cytosol	55.32	68.42
HORVU3Hr1G068630.1	Barley	mitochondrion	38.72	59.87
Zm00001d051211_P008	Maize	cytosol	90.64	45.32
CDX73737	Canola	cytosol, extracellular	37.87	35.6
CDX77988	Canola	cytosol, extracellular	37.87	35.6
CDX90655	Canola	cytosol	37.87	35.6
CDY29009	Canola	cytosol	37.87	35.6
CDY21248	Canola	cytosol	20.0	33.57
CDY33398	Canola	cytosol, extracellular	34.04	32.52
CDY18045	Canola	cytosol	34.04	32.52
CDY50408	Canola	cytosol, extracellular	33.62	32.38
CDY08208	Canola	peroxisome	33.19	31.97
CDX71518	Canola	cytosol	36.17	31.37
CDY37382	Canola	cytosol	26.81	31.34
CDY51800	Canola	peroxisome	33.19	31.2
CDY66240	Canola	extracellular	26.81	31.03
CDY02422	Canola	cytosol	35.74	31.0
CDY52371	Canola	cytosol	36.17	30.91
CDX93103	Canola	cytosol	34.47	30.8
CDX95156	Canola	cytosol	36.17	30.69
CDY17035	Canola	cytosol	35.32	30.4
CDY47593	Canola	cytosol	35.32	30.4
CDY04473	Canola	cytosol	31.91	30.12
CDY48190	Canola	cytosol	31.91	30.12
CDX77059	Canola	cytosol	31.91	30.12
CDX71476	Canola	cytosol	31.91	30.12
CDY02493	Canola	mitochondrion	33.62	28.21
CDY25683	Canola	cytosol, plastid	33.62	27.92
CDY69258	Canola	cytosol, mitochondrion	24.68	27.88
CDX81411	Canola	mitochondrion, plastid	31.91	26.5
CDY39501	Canola	cytosol, mitochondrion	22.55	26.37
CDY19309	Canola	extracellular	22.13	25.87

Protein Annotations

MapMan:19.2.6.1.1.2	Gene3D:3.60.20.10	GO:A0A078GC31	UniProt:A0A078GC31	EnsemblPlants:CDY22253	ProteinID:CDY22253
ProteinID:CDY22253.1	ProteinID:CDY26894.1	ncoils:Coil	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824
GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773
GO:GO:0051603	EnsemblPlantsGene:GSBRNA2T00018693001	InterPro:IPR023332	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227
PFAM:PF10584	ScanProsite:PS00388	PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF16	InterPro:Proteasome_alpha-type
InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b	InterPro:Proteasome_subunit_alpha2	SMART:SM00948	SUPFAM:SSF56235	UniParc:UPI0000001452

Description

BnaC02g25570DProteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:A0A078GC31]

Coordinates

chrLK032129:-:270064..272539

Molecular Weight (calculated)

25702.7 Da

IEP (calculated)

5.391

GRAVY (calculated)

-0.196

Length

235 amino acids

Sequence
(BLAST)

001: MGDSQYSFSL TTFSPSGKLV QIEHALTAVG SGQTSLGIKA SNGVVIATEK KLPSILVDEA SVQKIQHLTP NIGVVYSGMG PDFRVLVRKS RKQAEQYLRL
101: YKEPIPVTQL VRETATVMQE FTQSGGVRPF GVSLLVAGYD DKGPQLYQVD PSGSYFSWKA SAMGKNVSNA KTFLEKRYTE DMELDDAIHT AILTLKEGFE
201: GEISSKNIEI GKIGADKVFR VLTPAEIDDY LAEVE

Best Arabidopsis Sequence Match ( AT1G16470.1 )
(BLAST)

Arabidopsis Description

PAB1Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:A0A178WA13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.